Bifidobacterium longum subsp. longum JCM 1217: BLLJ_1396
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Entry
BLLJ_1396 CDS
T01419
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
blm
Bifidobacterium longum subsp. longum JCM 1217
Pathway
blm03030
DNA replication
blm03410
Base excision repair
blm03420
Nucleotide excision repair
blm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BLLJ_1396
03410 Base excision repair
BLLJ_1396
03420 Nucleotide excision repair
BLLJ_1396
03430 Mismatch repair
BLLJ_1396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
blm03032
]
BLLJ_1396
03400 DNA repair and recombination proteins [BR:
blm03400
]
BLLJ_1396
Enzymes [BR:
blm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BLLJ_1396
DNA replication proteins [BR:
blm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BLLJ_1396
DNA repair and recombination proteins [BR:
blm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BLLJ_1396
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLLJ_1396
MMR (mismatch excision repair)
DNA ligase
BLLJ_1396
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BLLJ_1396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
BRCT_2
Zn_Ribbon_1
Seipin
Motif
Other DBs
NCBI-ProteinID:
BAJ67063
LinkDB
All DBs
Position
complement(1647639..1650401)
Genome browser
AA seq
920 aa
AA seq
DB search
MSTNEQLAWDFDDGDVAEVRPDTGIARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAE
AAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRV
GGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPMSCEVKIDGLA
LNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFVEIRGEVFMRW
DDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLGQLTWGPDHPR
GTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGDIEHALDGIVVK
VDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVAVLKPVYVAG
STVARTTLHNGFEVKRKGILIGDTVVVRKAGDVIPELVGPVLERRKGREDQLREFVMPEF
CPSCGAKLSPAKEGDKDIRCPNVESCPAQLTERVISLASRKAFDIEHLGEQSAIALTNPE
ENRPDSVATYAPNITEVLVAPGEEPDPYEPVEGLELPAAQKPVLSNESGLFNLTAADLRD
VRVWREAAIVEVHETVGANGKKKKVRKRVGGSGLWHQVPAFWTAPTPAKKLTAKQLAERA
QGEAAIESAETQGGTASETTGAPTGAEAPLGTMPGFAAASYPEYDVPADAVIVRVDHKTT
RTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLA
AIENATIEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSL
PQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEE
LGIPMLSETQFAQLLATGTI
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaacgaacaactggcatgggatttcgacgatggggatgtggccgaggtccgg
cctgataccggtattgcacgttttgcccctggctccgaacaatggatagccgcactgcag
cccactgacgacgacgcgatacgcctcgaccgtttcgacgtgaacacgatgaccgctgag
gccgccgcccgcctgtgggctcgcgtggccgcatgggtggaatccgatcagatcgcctac
tacatcgacgactcacccgtcagctccgacgccgcttacgatgcgcgcatgcgttgcctc
gaacgactcgaagcggcgttcccctcactggacaatccgcagtcgcccacccatcgcgtc
ggcggttccttctccaacgacttcgcctccgtgcgccaccccagccgcatgatgagcctt
gacgacgtcttctccatcgaagaactcaaggattggtacgactcggtgattcgcgacctc
gattggcctgaatccaagcccctgcccatgagttgcgaggtcaaaatcgacggcctcgcc
ctgaacctcatctatcgcaacggcgtgcttgaacagggactgacgcgcggcgacggcgtt
acaggcgaagacatcaccctgaatgtgcgaaccatcggctccattcccgcaaacctcggc
ggccccaaggaagacgttccggacttcgtggaaatccgaggcgaagtgttcatgcgttgg
gatgatttccacaccctgaacaacgagcaggaggacgccggacgagcgcccttcgccaac
ccacgcaacgccgccgccggctcgctgcgtcaaaaagaccctcgcatcaccgccacccgt
cgcctgagcttctatgcgcatggtctggggcagctcacttgggggccggaccatccgcgc
ggcacccatgatgtggtcgccgaccagtcgcaggcctacgatctatacaccaagtggggc
gtgccggtctccccgcacaatcgtgcggtgacctcattccaggagatcctggacatgatc
gagtactacggcgagcatcgtggcgacatcgagcatgcacttgacggcatcgtcgtcaag
gtcgatgacctgggcctgcagcgtaccctcggcgccacttcgcgcgcgccgcgctgggcc
atcgcctacaaatacccgcccgaagaggtcaacaccgaactgctcaacatcaccgtgcag
gtggggcgtactggccgcgtgacgccggtcgccgtgctcaaacctgtctacgtggccggc
tccaccgtggctcgtaccacgctgcacaatggatttgaagtcaaacgcaagggcattctg
atcggcgacaccgtggtggtgcgcaaggccggcgatgtgattcccgaactggtcggcccg
gtgcttgaacggcgcaaagggcgtgaggaccagctgcgcgaattcgtcatgcccgagttc
tgcccttcatgcggcgcgaaactgtcacccgccaaggagggggacaaggacattcgctgc
ccgaatgtggagagctgcccggcccagttgaccgagcgcgtgatttcgctggcctcacgc
aaggcgttcgacatcgagcacttgggcgaacaatcggccatcgctctgaccaacccggag
gagaaccggcctgattcggtggcgacctacgcgccgaacatcaccgaggttctggtcgcc
cccggcgaagagcctgacccgtacgagccggtggaagggctggaattgccggccgcgcag
aagccggtgttgtccaacgaatccgggttgttcaacctgaccgccgccgatctgcgcgac
gtgcgcgtgtggcgtgaggccgcaatcgtcgaggtgcatgagacggtcggtgcgaacggt
aagaagaaaaaggtgcgtaagcgtgtcggcggctctggcctgtggcatcaggtgcctgct
ttctggaccgcgcccacgccggccaaaaagctcacggccaagcagctggccgaacgcgcg
caaggggaggccgcaatcgaatctgccgaaacacagggaggtaccgccagcgagacgacc
ggcgcacctaccggggctgaggcgccacttggtactatgccgggctttgccgcagcctcc
tatcctgagtatgacgtgccggccgacgcggttatcgtgcgcgtggatcacaagaccacg
cgcactggcgtcacggatgtaccggtgatcattcggcccggcgaaaacacgcgcaagatg
ttcgacgaaatggacaaggcccgtcacgccgacctgtggcgtgtgctggtcgcgttgtcg
attcgccggctcggtccgcctaccgcacgcctgattgcctcggcgatgggctcgctggca
gccatcgaaaacgccacgattgaagatctgacggccatcgacggggtgggcccggaaatc
gccgaatcggtggtgaactggttcgccgccacccgcgaacccggcgactggcgcggcgcg
actttgcgtgcttggcaggccgccggcgtgggcgtcgacgaggccgagaccagttcgttg
ccgcagacgctggccggcaaaaccgtggtggtcaccggttcattggagggctattcgcgt
gattccgccaaagaggcgattatcgagcgcggcggcaaggcggccggttcggtgagcaag
aagaccgattacgtggtgattggcgcaaacgccggctccaaggccgccaaggccgaggaa
ctcggcatccccatgctgagcgaaacccaattcgcccagctcctagccaccggcaccatc
taa
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