Bifidobacterium longum NCC2705: BL0052
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Entry
BL0052 CDS
T00094
Symbol
ligA
Name
(GenBank) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
blo
Bifidobacterium longum NCC2705
Pathway
blo03030
DNA replication
blo03410
Base excision repair
blo03420
Nucleotide excision repair
blo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BL0052 (ligA)
03410 Base excision repair
BL0052 (ligA)
03420 Nucleotide excision repair
BL0052 (ligA)
03430 Mismatch repair
BL0052 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
blo03032
]
BL0052 (ligA)
03400 DNA repair and recombination proteins [BR:
blo03400
]
BL0052 (ligA)
Enzymes [BR:
blo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BL0052 (ligA)
DNA replication proteins [BR:
blo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BL0052 (ligA)
DNA repair and recombination proteins [BR:
blo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BL0052 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BL0052 (ligA)
MMR (mismatch excision repair)
DNA ligase
BL0052 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BL0052 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Seipin
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
AAN23919
UniProt:
Q8G830
LinkDB
All DBs
Position
66882..69644
Genome browser
AA seq
920 aa
AA seq
DB search
MSTNEQLAWDFDDGDVAEVRPDTGIARFAPGSEQWIAALQPTDDDAIRLDRFDVNTMTAE
AAARLWARVAAWVESDQIAYYIDDSPVSSDAAYDARMRCLERLEAAFPSLDNPQSPTHRV
GGSFSNDFASVRHPSRMMSLDDVFSIEELKDWYDSVIRDLDWPESKPLPMSCEVKIDGLA
LNLIYRNGVLEQGLTRGDGVTGEDITLNVRTIGSIPANLGGPKEDVPDFVEIRGEVFMRW
DDFHTLNNEQEDAGRAPFANPRNAAAGSLRQKDPRITATRRLSFYAHGLGQLTWGPDHPR
GTHDVVADQSQAYDLYTKWGVPVSPHNRAVTSFQEILDMIEYYGEHRGDIEHALDGIVVK
VDDLGLQRTLGATSRAPRWAIAYKYPPEEVNTELLNITVQVGRTGRVTPVAVLKPVYVAG
STVARTTLHNGFEVKRKGILIGDTVVVRKAGDVIPELVGPVLERRKGREDQLREFVMPEF
CPSCGAKLSPAKEGDKDIRCPNVESCPAQLTERVISLASRKAFDIEHLGEQSAIALTNPE
ENRPDSVATYAPNITEVLVAPGEEPDPYEPVEGLELPAAQKPVLSNESGLFNLTAADLRD
VRVWREAAIVEVHETVGANGKKKKVRKRVGGSGLWHQVPAFWTAPTPAKKLTAKQLAERA
QGEAAIESAETQGDTASETTGAPTGAEAPLGTMPGFAAASYPEYDVPADAVIVRVDHKTT
RTGVTDVPVIIRPGENTRKMFDEMDKARHADLWRVLVALSIRRLGPPTARLIASAMGSLA
AIENATIEDLTAIDGVGPEIAESVVNWFAATREPGDWRGATLRAWQAAGVGVDEAETSSL
PQTLAGKTVVVTGSLEGYSRDSAKEAIIERGGKAAGSVSKKTDYVVIGANAGSKAAKAEE
LGIPMLSETQFAQLLATGTI
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaacgaacaactggcatgggatttcgacgatggggatgtggccgaggtccgg
cctgataccggtattgcacgttttgcccctggctccgaacaatggatagccgcactgcag
cccactgacgacgacgcgatacgcctcgaccgtttcgacgtgaacacgatgaccgctgag
gccgccgcccgcctgtgggctcgcgtggccgcatgggtggaatccgatcagatcgcctac
tacatcgacgactcacccgtcagctccgacgccgcctacgacgcgcgcatgcgttgcctc
gaacgactcgaagcggcgttcccctcactggacaatccgcagtcgcccacccatcgcgtc
ggcggttccttctccaacgacttcgcctccgtgcgccaccccagccgcatgatgagcctt
gacgacgtcttctccatcgaagaactcaaggattggtacgactcggtgattcgcgacctc
gattggcccgaatccaagcccctgcccatgagctgcgaggtcaaaatcgacggcctcgcc
ctgaacctcatctatcgcaacggcgtgcttgaacagggcctgacgcgcggcgatggcgtt
accggcgaagacatcaccctgaatgtgcgaaccatcggctccattcccgcaaacctcggc
ggccccaaggaagacgttccggacttcgtggaaatccgaggcgaagtgttcatgcgctgg
gatgatttccacaccctgaacaacgagcaggaggacgccggacgagcgcccttcgccaac
ccacgcaacgcggctgccggctcgctgcgtcaaaaagaccctcgcatcaccgccacccgt
cgcctgagcttctatgcgcatggtctggggcagctcacttgggggccggaccatccgcgc
ggcacccatgacgtggtcgccgaccagtcgcaggcctacgatctatacaccaagtggggc
gtgccggtctccccgcacaatcgtgcggtgacctcattccaggagatcctggacatgatc
gagtactacggcgagcatcgtggcgacatcgagcatgcacttgacggcatcgtcgtcaag
gtcgatgacctgggcctgcagcgtaccctcggcgccacttcgcgcgcgccgcgctgggcc
atcgcctacaaatacccgcccgaagaggtcaacaccgaactgctcaacatcaccgtgcag
gtggggcgtaccggccgtgtgacgccggtcgccgtgctcaaacctgtctacgtggccggc
tccaccgtggctcgtaccacgctgcacaatggatttgaagtcaaacgcaagggcattctg
atcggcgacaccgtggtggtgcgcaaggccggcgatgtgattcccgaactggtcggcccg
gtgcttgaacggcgcaaagggcgtgaggaccagctgcgcgaattcgtcatgcccgagttc
tgcccttcatgcggcgcgaaactgtcacccgccaaggagggggacaaggacattcgctgc
ccgaatgtggagagctgcccggcccagttgaccgagcgcgtgatttcgctggcctcacgc
aaggcgttcgacatcgagcacttgggcgaacaatcggccatcgctctgaccaacccggag
gagaaccggcctgattcggtggcgacctacgcgccgaacatcaccgaggttctggtcgcc
cccggcgaagagcctgacccgtacgagccggtggaagggctggaattgccggccgcgcag
aagccggtgttgtccaacgaatccgggttgttcaacctgaccgccgccgatctgcgcgac
gtgcgcgtgtggcgtgaggccgcaatcgtcgaggtgcatgagacggtcggtgcgaacggt
aagaagaaaaaggtgcgtaagcgtgtcggcggctctggcctgtggcatcaggtgcctgcc
ttctggaccgcgcccacgccggccaaaaagctcacggccaagcagctggccgaacgcgcg
caaggggaggccgcaatcgaatctgccgaaacacagggagataccgccagcgagacgacc
ggcgcacctaccggggctgaggctccacttggtactatgccgggctttgccgcagcctcc
tatcctgagtatgacgtgccggccgacgcggttatcgtgcgcgtggatcacaagaccacg
cgcactggcgtcacggatgtaccggtgatcattcggcccggcgaaaacacgcgcaagatg
ttcgacgaaatggacaaggcccgtcacgccgacctgtggcgtgtgctggtcgcgttgtcg
attcgccggctcggtccgcctaccgcacgcctgattgcctcggcgatgggctcgctggca
gccatcgaaaacgccacgattgaagatctgacggccatcgacggggtgggcccggaaatc
gccgaatcggtggtgaactggttcgccgccacccgcgaacccggcgactggcgcggcgcg
actttgcgtgcttggcaggccgccggcgtgggcgtcgacgaggccgagaccagttcgttg
ccgcagacgctggccggcaaaaccgtggtggtcaccggttcattggagggctattcgcgt
gattccgccaaagaggcgattatcgagcgcggcggcaaggcggccggttcggtgagcaag
aagaccgattacgtggtgattggcgcaaacgccggctccaaggccgccaaggccgaggaa
ctcggcatccccatgctgagcgaaacccaattcgcccagctcctagccaccggcaccatc
taa
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