Salinivirga cyanobacteriivorans: L21SP5_00863
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Entry
L21SP5_00863 CDS
T04172
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
blq
Salinivirga cyanobacteriivorans
Pathway
blq03030
DNA replication
blq03410
Base excision repair
blq03420
Nucleotide excision repair
blq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L21SP5_00863 (ligA)
03410 Base excision repair
L21SP5_00863 (ligA)
03420 Nucleotide excision repair
L21SP5_00863 (ligA)
03430 Mismatch repair
L21SP5_00863 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
blq03032
]
L21SP5_00863 (ligA)
03400 DNA repair and recombination proteins [BR:
blq03400
]
L21SP5_00863 (ligA)
Enzymes [BR:
blq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L21SP5_00863 (ligA)
DNA replication proteins [BR:
blq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L21SP5_00863 (ligA)
DNA repair and recombination proteins [BR:
blq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L21SP5_00863 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L21SP5_00863 (ligA)
MMR (mismatch excision repair)
DNA ligase
L21SP5_00863 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L21SP5_00863 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
BRCT_2
HHH
PTCB-BRCT
zf-C4_Topoisom
Auto_anti-p27
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
ALO14533
UniProt:
A0A0S2HX32
LinkDB
All DBs
Position
1034919..1036922
Genome browser
AA seq
667 aa
AA seq
DB search
MSTSDIKEKIYELREQLHHHNHLYYVKSTPEITDYEYDMMLKELEQLEKAHPEFADTNSP
TSRVGDDRDQRFEEVQHQYPMLSLANTYNEQELRDFDNRVRKVAGNDFTYVCELKFDGVS
ISLRYEKGRLSKAVTRGDGAQGDDVTENVKTIKSIPLKLSDGDYPDFFEIRGEIYMPKSK
FLEMNERREQQGEKTFANPRNATAGSIKLIHSSAVAQRPLDCFLYYLMADDLPGSSHFEN
MQKAAQWGFRVPDTMQRAKNIDTVLEYIHHWETARHELPYEIDGIVIKVDELELQEKLGF
TAKSPRWAISYKYKAEQASTHLKSVDFQVGRTGAVTPVANLEPVFLAGTTVKRASLHNQD
IIKKLDLHHGDTVFVEKGGEIIPKITAVDKEKRPKDANPVEFITQCPECGTQLIRKEGEA
AHFCPNENHCPPQQKGKFVHFISRKAMNIEWLGEETIQLFLKENLIETLPDLYELKAHDI
EKLERLGSKSAQNIIQSIQSSKSVPMSRVLYALGIRFVGETVAKKLARHFKSIQELANAT
TEELVAVDEIGEKIAFSIRKYFDNDENKKLVERLGEYGLQMTAANDKPKSGALDGLKIVA
TGKLNNFTRDEIKETIEAHGGKAVSSVSSQTDLLLAGENAGSSKINKAQAAGVRIIDEAE
FMKLISK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttccgacatcaaagaaaaaatatatgaattgcgtgaacaattacaccatcac
aaccacctctactatgtaaaaagcacgcccgaaataactgattatgaatacgacatgatg
cttaaagagttggaacaactcgaaaaagcgcatccggagtttgccgacaccaacagccct
actagccgtgtaggtgacgatcgcgatcagcgttttgaggaggttcagcatcagtacccc
atgctatcgctcgcaaacacctacaacgagcaagaattgagagatttcgacaaccgggtg
cgtaaggtggcaggtaacgatttcacttatgtgtgcgagcttaaattcgacggggtatcc
atcagtctgcgttatgaaaaaggacgtttaagcaaggctgtaacacgcggcgatggcgca
cagggtgacgatgtaacagaaaacgtaaaaaccattaaaagtattccattaaaactaagc
gatggcgattacccggacttttttgaaataagaggtgagatttacatgcccaaatcaaaa
tttctggagatgaatgagcgccgggaacagcagggagaaaaaacctttgccaatccgcgc
aatgctacagcaggctcaatcaaacttattcactcatcggcagtggcgcaaagaccactt
gactgtttcctttattacctgatggccgatgatttacccggatcatcgcattttgaaaat
atgcaaaaagctgcgcaatgggggtttcgcgtacctgacaccatgcaaagagcaaaaaat
atagatacagtgctcgaatatatacaccactgggaaacagcaaggcatgagctaccatac
gaaatagacggcatcgtaataaaagtagatgagctcgaactacaggaaaaactgggcttc
acagccaaatctccccgctgggcaatctcctacaaatacaaagccgaacaagccagcaca
cacctaaaatcagttgattttcaggtaggtagaaccggcgcagtgactccggttgccaac
ctggagcccgtatttcttgcaggtacaacggtgaaacgtgcttctttacacaaccaggac
atcataaaaaaactggacttgcaccatggggacacagtatttgtggaaaaagggggcgaa
attataccgaaaataaccgccgttgataaagaaaaacgtccgaaagatgcaaatcctgtt
gagttcattacccaatgccctgaatgtggcacgcaactcatacgtaaagaaggcgaagca
gcacatttttgccccaatgaaaatcactgcccacctcagcaaaaaggcaagtttgtgcat
tttatcagtcgcaaagccatgaacatcgaatggctcggagaagaaactatacagctattt
ctgaaagaaaacctaatcgaaaccctgcctgatttgtacgaacttaaagcccatgatatt
gaaaagctggaaagattaggctccaaatcagctcaaaacatcattcaaagcatacaaagc
tccaaatcagtacccatgagccgggtgctttatgcactggggatacgatttgtaggagaa
accgttgctaaaaaacttgcacgccatttcaaatccatacaggaactggcaaatgccaca
accgaagagctggttgctgtggatgagataggtgaaaaaatagctttcagcatacgcaaa
tactttgacaacgacgaaaacaaaaaactggttgaaagactcggcgaatatggcctgcaa
atgactgctgccaacgacaaacctaaatcgggcgccctggacggtctgaaaatagtagca
accggaaagcttaacaatttcaccagagatgaaattaaagaaacgatagaagctcacggt
ggcaaggcagtatcttcagtatcatcgcaaaccgatcttcttcttgccggcgaaaatgct
ggaagctcgaaaataaacaaagcacaggcagccggtgttcgtattatcgatgaagcggaa
ttcatgaaacttattagcaaataa
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