Bifidobacterium animalis subsp. lactis V9: BalV_0672
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Entry
BalV_0672 CDS
T01843
Name
(GenBank) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
blv
Bifidobacterium animalis subsp. lactis V9
Pathway
blv03030
DNA replication
blv03410
Base excision repair
blv03420
Nucleotide excision repair
blv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BalV_0672
03410 Base excision repair
BalV_0672
03420 Nucleotide excision repair
BalV_0672
03430 Mismatch repair
BalV_0672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
blv03032
]
BalV_0672
03400 DNA repair and recombination proteins [BR:
blv03400
]
BalV_0672
Enzymes [BR:
blv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BalV_0672
DNA replication proteins [BR:
blv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BalV_0672
DNA repair and recombination proteins [BR:
blv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BalV_0672
NER (nucleotide excision repair)
GGR (global genome repair) factors
BalV_0672
MMR (mismatch excision repair)
DNA ligase
BalV_0672
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BalV_0672
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DUF8259
HHH_8
Motif
Other DBs
NCBI-ProteinID:
ADG33260
LinkDB
All DBs
Position
822272..824863
Genome browser
AA seq
863 aa
AA seq
DB search
MEDALIADEQLDRYPIGSDPWIDSLRDIDSDAMELDDLDVSKLNVEQAVRLWSRLSAWVE
GDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQLDTPQSPTHRVGGTFSNDFTAVRHP
SQMMSLDDVFSFEELRAWYDGVRKDLEWPEDKLLPMTCEVKIDGLALNLIYRNGVLTQGL
TRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPDMVEIRGEVFMRWDDFHKLNEANEDAG
RPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHGIGELVWGSGKPVDVADEVRNQSDAYT
MYRKWGVPISPHNREVTDFDQILDMIEYYGEHRGDIEHALDGIVVKVDDLALQRRLGSTS
RAPRWAIAYKYPPEEVNTKLLNIVVQVGRTGRVTPVAILNPVYVAGSTVSRTTLHNAYEV
KRKGILIGDTVVVRKAGDVIPELVGPVIAKREGHEQDLREFVMPTRCPSCDTVLRYEKEG
DKDLRCPNSESCPAQLAERVINLAARKAFDIEHLGDQSAVALTNPEDNRPDSVEAYAPGV
REIVVEPGEEPAPYLAPSGLELPPIQEPVLTSEANLFDLEASDLRDVYVWREAQIIEVRR
HVDSHGKERKVRHRLGGSGLWHREPAFWSGVKDAPLKKDANRKTVKDSEGNPEYEVKPDA
VIVGHGRNGRPRIEEPTENTRKMLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFK
TLDALADASAEELEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGVGMSTHDE
GLPQTLEGKSVVVTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKA
EELGIPIIDEQQFDTLLATGDVQ
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgcattgattgcagacgagcagctcgacaggtatccgattggttcggatccg
tggattgactcattgcgtgacatcgacagtgatgcgatggaacttgatgatctcgacgtg
tcgaagctcaatgtagagcaggcggtgcggctgtggtcacgtctgagtgcttgggtggag
ggcgatcaggtggcctattacgtcaaggacgccccgctttcctccgatgcagcgtacgat
gcgcgcatgaattgcctcaaacgactggagtcggagttcccccagcttgacacgcctcag
tcaccgacccatcgggtaggtggcacattctcgaacgacttcacggcggtgcggcacccc
tcccagatgatgagcctcgatgatgtgttctccttcgaggaactgcgtgcctggtacgat
ggcgtgcgcaaggacctcgaatggccggaagacaagctgttgcccatgacctgcgaggtg
aagatagacggtctggctctgaatctcatctaccgcaacggagttctgacgcagggactc
acccgtggtgatggggtcactggcgaagacatcacgatgaatgtgcgcacgatacactcc
atccccaccaatctggatggcccggagggcgatattcccgatatggtggagattcgcggc
gaggtgttcatgcggtgggatgattttcacaagctcaacgaggcgaacgaagatgcgggc
agaccaccgttcgccaatccacgcaatgcggccgcgggatcgctacgccagaaggatccg
cgcatcaccgcgcagcggcatctgagtttctatgcacatggcatcggcgaactggtatgg
gggtcgggcaagccggtggatgtggccgacgaggtgaggaaccagtcggatgcctacacg
atgtaccgcaaatggggggtgccgatttcgccccataaccgcgaggtcaccgacttcgac
cagattctcgacatgatcgaatactacggcgagcaccggggtgacatcgagcatgcgctc
gacggcattgtggtcaaagtggacgacctcgcgttgcaacgcagactgggcagcacctca
cgcgcgccgcgttgggccatcgcctacaaatacccgcccgaggaggtcaacaccaagctc
ctcaatattgtggtgcaggtcgggcgcacgggcagagtcacaccggtggccatactgaac
ccggtgtatgtggccggatccacggtgtcgcgcaccacgctgcacaatgcatacgaggtc
aaacgcaaaggcattctcatcggcgatacggtggtagtgcgcaaggccggcgatgtgatc
cccgaactggtcggcccagtaatcgccaaacgcgaagggcatgaacaggacctacgcgag
ttcgtcatgcctacacgatgcccatcctgtgacaccgtgttgcggtatgagaaggaggga
gacaaggacctgcgatgcccgaattcggaaagctgcccggcccagctcgccgaacgtgtg
atcaatctggcggcccgcaaggcattcgacattgagcatctgggtgaccaaagcgcggtg
gcgctgacgaaccccgaagacaacaggccggactcggtggaagcctacgcccccggcgtg
cgtgagatcgtggtggaaccaggcgaggagccggcaccgtatctggctccgagcgggctg
gaacttccgcccatccaggagcccgtactcaccagtgaagcgaatttgttcgacctcgaa
gcaagcgacctccgggatgtctatgtgtggcgtgaagcgcagatcatcgaagtgcgcagg
cacgtggattcgcatggcaaggagaggaaggtgcgccatcgtctcggcggttccggcctg
tggcatagggagccggctttctggtccggggtcaaggatgccccgctgaagaaggacgcg
aatcgcaagacggtgaaggactccgaaggcaaccccgaatacgaggtcaaaccggatgcc
gtgattgtgggccatggcaggaatgggcggccgcgcatcgaggaacccaccgagaacacc
aggaagatgctcgatgagatcgagaaagccaagcataccgatctgagccgcgtcctcgta
gcgctctccattcgccatgtgggcccaccgaccgcattcacgctggccaagcactttaag
acactcgatgcgctggccgacgccagtgccgaggaactcgaacagatcgacggcataggc
gcggagatcgccgattccattgcgacattcttcgaggaggctcgcatgccgggcaattgg
cgcggccgtgtgctggaggcgtggaaagccgccggtgtgggcatgagcacgcatgacgag
ggtcttcctcagacgttggaaggcaagagcgtggtggtcaccggcacccttgagcatttc
tcccgcgaatcggctaaggaggccatcgaacgccgtggcggcaaggcctccggatcggtg
agcaggaagacggattgggtggtcgtcggagccaatcccggttcgaaggccacgaaggcc
gaggaactgggcatcccgatcatcgacgagcaacagttcgacactttgctcgccaccggc
gacgtgcaatga
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