Burkholderia mallei ATCC 23344: BMA1560
Help
Entry
BMA1560 CDS
T00204
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bma
Burkholderia mallei ATCC 23344
Pathway
bma03030
DNA replication
bma03410
Base excision repair
bma03420
Nucleotide excision repair
bma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BMA1560 (ligA)
03410 Base excision repair
BMA1560 (ligA)
03420 Nucleotide excision repair
BMA1560 (ligA)
03430 Mismatch repair
BMA1560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bma03032
]
BMA1560 (ligA)
03400 DNA repair and recombination proteins [BR:
bma03400
]
BMA1560 (ligA)
Enzymes [BR:
bma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BMA1560 (ligA)
DNA replication proteins [BR:
bma03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BMA1560 (ligA)
DNA repair and recombination proteins [BR:
bma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BMA1560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BMA1560 (ligA)
MMR (mismatch excision repair)
DNA ligase
BMA1560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BMA1560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
MctB
HHH
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AAU47760
UniProt:
Q62JB9
LinkDB
All DBs
Position
1:complement(1619857..1621932)
Genome browser
AA seq
691 aa
AA seq
DB search
MARSPVEPPASQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPD
LVTPDSPTQRVGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGT
VTEPVEYACELKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKR
IPRMLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF
AYGIGVLDGADMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLTAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAQEFV
MPTECPECGSRIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
EQNLVRTPADLFNLGFSTLVALDRFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGES
TAKDLAKHFGSLDPIMDAPIDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVT
WPEGPPAPRAPQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEAGMHTLLEGHAR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatccccagttgaaccgcccgccagccagccggcgaagcgcgccgcgtggctg
cgcgccgagctcgagcgggcgaactacgcgtattacgtgctcgaccagccggacctgccc
gacgccgagtacgatcgcctcttcgtcgaactccaacggatcgaggccgagcaccccgat
ctcgtcacgcccgattcgccgacgcagcgcgtcggcggcgaggccgcgagcggcttcacg
ccggtcgtccacgacaagccgatgctctcgctcaacaacggctttgccgacgaggacgtc
atcgcgttcgacaagcgcgtcgccgacggcctcgacaaggcgaccgacctcgccggcacc
gtgaccgagcccgtcgaatacgcgtgcgagctgaagttcgacggcctcgcgatctcgctg
cgctacgagaacggccgcttcgtgcaggcgtcgacgcgcggcgacggcacgacgggcgaa
gacgtcaccgagaatatccgcacgatccgtgcgattccgctgacgctcaagggcaagcgg
ataccgcgcatgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcgcgg
ctgaacgagcgccagcgcgcggcgggccagcgcgagttcgccaatccgcgcaacgcggcg
gcgggcagcctgcggcagctcgattcgaagatcaccgcgtcgcggccgctttcgtttttc
gcatacggaatcggcgtgctcgacggcgccgacatgcccgacacgcacagcggcctgctc
gactggtacgagacgctcgggttgcccgtgaaccgggagcgcgcggtcgtgcgcggcgcg
gcgggcctgctcgcgttcttccattcggtgggcgagcggcgcgaatcgttgccgtacgac
atcgacggcgtcgtctacaaggtgaaccgccgcgacgagcaggatcggctcggcttcgtg
tcgcgcgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaggcgctcacgaag
ctcaccgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgcctc
gagcccgtgttcgtcggcggcgcgaccgtcacgaacgcgacgctgcacaacgaggacgag
gtgcgccgcaaggacatccgcatcggcgacacggtcatcgtgcgccgcgcgggcgacgtg
attcccgaagtggtatcggccgtgctcgaccggcgtcccgccgacgcgcaggagttcgtg
atgccgaccgaatgcccggaatgcggatcgcggatcgagcgattgcccgacgaggcgatc
gcgcgctgcacgggcgggctgttttgccccgcgcagcgcaagcaggcgctctggcacttc
gcgcagcgccgtgcgctcgacatcgatgggctcggcgagaagatcatcgatcaactcgtc
gagcagaacctcgtgcgcacgccggccgatctgttcaatctcggcttctcgacgctcgtc
gcgctcgatcgcttcgcggagaaatccgcgcggaatctgatcgattcgctcgaaaaggcg
aagcacacgacgctcgcgcgcttcatttacgcgctcggcatccggcacgtcggcgaatcg
acggcgaaggacctcgcgaagcacttcggctcgctcgatccgatcatggacgcgccgatc
gacgcattgctcgaggtcaacgacgtcgggccgatcgtcgccgaatcgatccatcaattc
ttcgccgaggagcacaatcgcacggtgatcgaacagttgcgcgcgcggggcaaggtcaca
tggcccgaagggccgcccgcgccgcgcgcgccgcaaggcgtgctcgcgggcaagaccgtc
gtgctcacgggcacgctgccgacgctcacgcgggaagccgcgaaggagatgctcgaggcg
gcgggcgcgaaagtcgcgggctcggtatcgaagaagaccgattacgtcgtcgcgggcgcc
gacgcgggcagcaagctcgcgaaagccgaggaactcggcattccggtgctggacgaagca
ggcatgcacacacttctggagggccacgcgcgatga
DBGET
integrated database retrieval system
