Bartonella machadoae: LNM86_08485
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Entry
LNM86_08485 CDS
T08469
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmac
Bartonella machadoae
Pathway
bmac03030
DNA replication
bmac03410
Base excision repair
bmac03420
Nucleotide excision repair
bmac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LNM86_08485 (ligA)
03410 Base excision repair
LNM86_08485 (ligA)
03420 Nucleotide excision repair
LNM86_08485 (ligA)
03430 Mismatch repair
LNM86_08485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmac03032
]
LNM86_08485 (ligA)
03400 DNA repair and recombination proteins [BR:
bmac03400
]
LNM86_08485 (ligA)
Enzymes [BR:
bmac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LNM86_08485 (ligA)
DNA replication proteins [BR:
bmac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LNM86_08485 (ligA)
DNA repair and recombination proteins [BR:
bmac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LNM86_08485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LNM86_08485 (ligA)
MMR (mismatch excision repair)
DNA ligase
LNM86_08485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LNM86_08485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DUF948
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UNE53671
LinkDB
All DBs
Position
complement(1756384..1758537)
Genome browser
AA seq
717 aa
AA seq
DB search
MKKETTKNLTALEAESELEWLAKEIARHDVLYNSNDQPEISDAEYDALRRRNAEIEALFP
ELIRADSPSFKIGAPVSEKFEKSVHTQAMLSLDNAFSSEDVREFVERVRRFLRLPETQIL
EITAEPKIDGLSLSLRYEEGRLVQAATRGDGYVGENVTVNARTIADIPKVLQGKFPDILE
VRGEVYMGQEDFQALNKRQQEKGKLTFANPRNAAAGSLRQLDSRVTASRKLKFFAYACGE
VSEIFAESQMEMIKKLKEYGFVINPLTKVFKTAEEMTSYYHTIEERRHSLSYDIDGIVYK
VNDLMLQTRLGFVSRSPRWAIAHKFPAEKALTLLEAIHIQVGRTGALTPVAHLAPITVGG
VVVTNASLHNEDYIKGIGHKGEPIREGRDIRVGDTVIVQRAGDVIPQIVDIVIEKRPHNA
SAFVFPHLCPACGSHAVREVGEAVRRCTGGLICPAQAIERMRHFVSRNAFDIEGLGKKQV
EFFFHVQDETLCIRTPADIFTLQRRQEKSLTRLENIEGFGIVSVRKLYDAINARRKIPLS
RFLFALGIRHVGEVNARRLARAYQNYTTFETAVMAAKMPCDKKNEKGNEAWMELMNIEGI
GSQVASAIIDFYQEAHNREVLSLLLKEVTPLDEELIMTDSSPVAGKVIVFTGTLARMSRD
EAKALAERLGAKTSGSLSKKTDLLVVGAGAGSKLAKAQELGVEVIDEETWLQLLSTH
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggaaacaacaaaaaacttaactgctcttgaagcagaaagtgaattagaatgg
ttagcaaaagaaattgctcgtcatgatgtcctttacaatagtaacgaccagcctgaaatt
tctgatgcagaatatgatgctcttcgtcgccgtaatgcagaaattgaagccctttttcct
gagcttattcgtgcagattctccttcctttaaaatcggagctccagtttctgaaaagttt
gaaaaatctgttcatacacaggcaatgctttcccttgataatgcatttagttctgaagat
gttcgtgaatttgttgagcgcgttcgtcgttttttacggctgccagaaacccagatattg
gaaataactgctgaacctaaaattgatggtttatctttgtctttgcgctatgaagaggga
agacttgtgcaggctgcaacacgtggtgatggatatgtcggcgaaaatgttacagtgaat
gcacgaacaattgccgatattccaaaagttttgcagggcaaatttcctgatattcttgag
gtgcgtggtgaagtttatatgggacaggaggatttccaagcactgaacaagaggcaacaa
gaaaaaggaaagttaacttttgctaatcctagaaatgcagcagctggttcgttgcgtcaa
cttgattcacgagtaaccgcaagtagaaagcttaaattttttgcttatgcttgtggtgaa
gtgagtgaaatctttgccgaaagccaaatggagatgataaaaaagctaaaagaatatggc
tttgttatcaatccattaacaaaagttttcaaaacagcagaagagatgacttcctattat
catactattgaagaacgtcgtcattccttaagttatgatatagatgggattgtttataag
gtgaatgatttaatgctccagacacgtttggggtttgtctctcgttcaccacgttgggca
attgcgcataaattcccagcagaaaaggctctgacacttttagaagctattcatattcaa
gtcggtcgaactggagctctaacgcctgttgcacatcttgctcctattactgttggtggc
gtggtggttaccaatgcaagtttgcataatgaagattatattaagggaattggtcataag
ggtgagccaattcgtgaagggcgtgatatccgtgtcggtgatacagtgattgtacaacgt
gctggtgatgtaatccctcagattgttgatattgttattgaaaagcgtcctcacaatgct
tctgcttttgtctttccgcatctgtgtccagcttgtgggagtcatgctgttcgtgaggtg
ggtgaagcggtacgccgatgcactggtgggcttatttgtccggcacaagcaattgagcgt
atgcgtcattttgtttcgcgtaatgcctttgatattgagggacttgggaaaaaacaggtg
gagttcttttttcatgttcaagatgaaacgctttgtattcgtacaccagccgatattttt
actttacaacggcgacaagaaaaatctttgacgcgtttagaaaatatagaaggttttggt
attgtttccgttcgtaaactttatgatgccattaatgcgcgccgcaaaattcctttaagt
cgttttttatttgcacttggaattcgtcatgttggagaggtcaatgcacggcgtctcgca
cgcgcatatcaaaattatacaacgtttgaaactgctgtgatggcagctaagatgccgtgt
gataagaagaatgaaaaaggcaatgaggcttggatggagcttatgaacatcgaaggaatt
ggatcgcaggtagcgagcgcaatcattgatttctatcaagaagcgcataaccgtgaggtt
ttgtctctcttgcttaaggaagtgacacctcttgatgaagaacttatcatgacagactct
tcacccgtagcaggaaaggtcattgtttttacaggaactttggcgcgcatgtcccgtgat
gaagcaaaagcactggcagaacgattgggtgcaaagacctccggttcactttctaaaaaa
accgatcttcttgttgttggagctggagcaggatcgaagctagccaaagcgcaagaatta
ggtgttgaggttatcgatgaagagacttggctgcaattgttgtcaacacattga
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