Bermanella marisrubri: HF888_10890
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Entry
HF888_10890 CDS
T06527
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03030
DNA replication
bmar03410
Base excision repair
bmar03420
Nucleotide excision repair
bmar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF888_10890 (ligA)
03410 Base excision repair
HF888_10890 (ligA)
03420 Nucleotide excision repair
HF888_10890 (ligA)
03430 Mismatch repair
HF888_10890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmar03032
]
HF888_10890 (ligA)
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_10890 (ligA)
Enzymes [BR:
bmar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HF888_10890 (ligA)
DNA replication proteins [BR:
bmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF888_10890 (ligA)
DNA repair and recombination proteins [BR:
bmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HF888_10890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF888_10890 (ligA)
MMR (mismatch excision repair)
DNA ligase
HF888_10890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF888_10890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QIZ84690
LinkDB
All DBs
Position
complement(2343093..2345177)
Genome browser
AA seq
694 aa
AA seq
DB search
MSDQPSLFDNPNDNVPKVDDATLTRVAELRDELNRANHAYYVLDDPSIPDAEYDRLFHEL
KGLESKHPELLTKDSPTQRVGATPLSEFETVAHEVPMLSLDNAFDDQDMRDFNRRISERL
TTKSSIRFACEPKLDGIAVSLLYENGKLVRAATRGDGAVGENITQNIRTVYSVPLTLMGN
DHPPVLEVRGEVYMPKKGFEAFNVKARERGEKTFVNPRNAAAGSLRQLDSRITASRPLEF
CCYSMGRVDGAELPTVHSEILKKFSEWGFKINPEMAVVEGVEGCLDYYENLAAKRNDLPY
EIDGIVYKVDDLKLQQRLGFVSRAPRWAIARKFPAQEEMTLLKGIEFQVGRTGAITPVAR
LEPVFVGGVTVSNATLHNMDEVERLDARIGDTVVIRRAGDVIPQVASVVKEKRPDNSQKI
QLPDACPVCDSHVERVEGEAVARCTGGLVCAAQRKEAIKHFASRKAMDIDGLGDKIVEQL
VDEGKIKSFVDLYKLKHEDIASLERMGDKSAQNLLKAIEASKNTSFPKFLYALGIREVGV
ATANNLVQHFLTIRALVKASFDELIEVDDVGPIVAEHILNFFAEPHNQTIIDGLLNIGIT
WPEVKSVSNSELPLSGETYVVTGTLSAMGRENAKAYLQQLGAKVAGSVSKKTSALVAGEK
AGSKLTKAQDLEVPVLDEEQFLSLLAEHGIEPEA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcaaccttccttgtttgataaccctaatgacaatgtccctaaggttgatgat
gcaacactcactcgtgttgcagaattacgcgatgagcttaatcgagccaatcacgcctac
tatgtattggatgatccgagtattcctgatgcggaatacgatcgtctttttcatgaactc
aaaggcttagaaagcaaacatcctgaactgttaacaaaagattcacccacgcaacgtgtt
ggtgcaacacccttgtctgaatttgaaactgtggcccatgaagtgcctatgttgagtttg
gataatgcgtttgatgatcaggatatgcgagattttaatcgccgcattagcgaacgttta
acaactaagtcgtccattaggtttgcttgtgaacctaagcttgatggcatcgcggttagt
ctgctttatgaaaatggaaagttagtgcgtgcggctacgcgtggtgatggtgctgttggc
gaaaacattacgcaaaatattcgtacggtttatagtgtaccgcttacactcatgggcaat
gatcacccaccggtgttagaagtgcgcggtgaagtgtatatgcccaaaaaaggttttgaa
gcttttaatgtaaaagcccgcgaacgtggcgaaaaaacctttgttaatcctcgcaatgct
gctgccggtagtttgcgacaattagattctcgtattaccgcatcgcgcccattggagttc
tgttgttatagtatggggcgcgttgacggtgctgagctaccaacggttcatagtgaaatc
ttgaaaaagttttctgaatggggattcaaaatcaatcctgaaatggccgtcgttgaggga
gtagaaggctgtctcgattattacgaaaatctagccgctaagcgaaatgatttgccctat
gaaattgatggtattgtttacaaagtcgatgacttgaaacttcagcaacgtttaggtttt
gttagtcgtgcgccgcgctgggccattgctcgtaaattccctgcacaagaagaaatgacg
ttactcaaaggcatagagtttcaagtgggccgtacgggcgctatcacgccggtggcacgt
ttggaacctgtctttgtgggcggcgttactgtatccaatgcaacgctacataacatggat
gaagtagaacgcttagacgctcgcattggcgatactgttgtgattcgtcgagcaggtgat
gtgattccacaagtagccagtgtcgttaaagaaaagcgcccagataattcacaaaaaatt
caattaccggatgcctgtccagtatgcgatagtcatgtggagcgagtggaaggtgaagcg
gtagcccgttgtacaggtggtttggtttgtgcggcgcagcgtaaagaagcgattaagcat
tttgcatctcgcaaggctatggatatagatggcttgggcgataaaatcgtggagcagttg
gtcgatgaaggcaaaataaaaagcttcgtggacttgtataagcttaagcatgaagacatc
gccagtcttgagcgtatgggtgataaatcggcgcaaaatcttttgaaggcaattgaagcc
agcaaaaacaccagtttccctaagtttttatatgcactgggtattcgtgaagtcggtgtg
gctacggccaataacctcgttcagcattttctaaccattcgtgcgctcgtcaaagcgtct
tttgatgagctgattgaagtggatgatgtgggcccgattgtggctgagcatattttaaat
ttcttcgctgagcctcataaccaaactattattgatggtttattgaatattggcatcacg
tggccagaagtaaaatcagtatccaatagtgaacttccgttaagtggcgaaacctatgtg
gtgacaggaaccttgtctgcaatggggcgtgaaaatgcaaaagcctacttacagcagtta
ggcgcaaaagtcgcaggcagtgtaagcaagaaaacctcggcgctagtagcgggtgaaaaa
gcgggaagtaaattaaccaaggcacaagatttggaagtgcccgtattagatgaagaacaa
tttctgtctttattagcggagcatggcattgaacctgaagcttag
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