Blautia massiliensis: LK422_01125
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Entry
LK422_01125 CDS
T08787
Symbol
ligA
Name
(Genbank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmas
Blautia massiliensis
Pathway
bmas03030
DNA replication
bmas03410
Base excision repair
bmas03420
Nucleotide excision repair
bmas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK422_01125 (ligA)
03410 Base excision repair
LK422_01125 (ligA)
03420 Nucleotide excision repair
LK422_01125 (ligA)
03430 Mismatch repair
LK422_01125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmas03032
]
LK422_01125 (ligA)
03400 DNA repair and recombination proteins [BR:
bmas03400
]
LK422_01125 (ligA)
Enzymes [BR:
bmas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LK422_01125 (ligA)
DNA replication proteins [BR:
bmas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LK422_01125 (ligA)
DNA repair and recombination proteins [BR:
bmas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LK422_01125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LK422_01125 (ligA)
MMR (mismatch excision repair)
DNA ligase
LK422_01125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LK422_01125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
DUF2797
Zn_Tnp_IS1595
RTX_C
Aurora-A_bind
Motif
Other DBs
NCBI-ProteinID:
UEA29045
LinkDB
All DBs
Position
complement(210426..212420)
Genome browser
AA seq
664 aa
AA seq
DB search
MSVKRIKNLVKQLNEYRHAYYNQDAPLVSDAEYDRLFDELKELEEQTGFILSNSPTQTVG
YYPVSELAKVTHPIPLLSLEKTKLISELLDFMKGQEVLFMLKLDGLTTKLIYEDGRLIQA
STRGDGEVGEDITHNIPAFLNVPLTIPHKERLVITGESFIPTNDFERLKDTLRDGNGKPY
KNGRNFASGSVRSLDPKNCIGRCVRFLPFNVLEGMEDVPFPDSRACKLEGLTHLGFGYCP
FFSISGTGLSKEYAEKFIQELVSTAANLHLPIDGIVMIFDSLSYSKSCGKTGHHYKDGLA
YKFEDDTYETFLREIEWTPTRFGEIAPVGIFDTVEIDGCDVSRASLHNLTFIKNLELVPG
CRILVSKRNMIIPHIEDNLDRGRYTDITPPVCPCCGSKTRTYSRKTSDGRTVETLHCDNP
QCDSQITRRFVHFASKKAMNIEGLSEATLEKFLNLGYLHSFQDIYHLEEHREDIVALDGY
GEKSFDRLWESINASRRTSFVRYLVSMDIPMIGRTKSRILDTVFSGNLTAFEQAAVGDYD
FTQLEDFGEILNHNIHSWFADEANLDLWKNLQNEFTFEQRKEETIMTKENKFTGCTIVAT
GKLEHFTRDGINDKILELGAKPGSSVTKKTDYLICGEKAGSKLAKAQSLGIPILTEAEFL
EMIA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtcaaaagaattaagaatcttgtaaaacaactcaatgaataccgtcatgcctac
tacaatcaggatgcccctctggtatctgatgccgagtatgaccgactctttgacgaactg
aaggaactggaggaacagactggtttcatcctgtcaaattctccgacacagacggttgga
tattatccggtcagtgaacttgccaaagtcacccatccgattccactgctctcgcttgag
aaaacaaaactgatttcagagcttttagatttcatgaaaggacaggaagttctctttatg
ctgaaactggacggtttgactaccaaactcatttacgaagatggcagactgattcaggct
tctacccgtggagatggtgaagtgggggaagatattacacacaatatcccggcattttta
aatgtaccgcttaccattccacacaaagaacgtctggtcattaccggtgagtcttttata
ccaaccaatgattttgaacgtctgaaagatactctgcgtgatggaaatggaaaaccttat
aaaaacggacgtaattttgcttccggatcagtacgaagtcttgatccgaagaactgtatc
ggacgttgtgttcgctttcttccgttcaatgtattagaaggaatggaggatgttcccttc
ccggacagcagagcctgcaaattagaaggtttaacacacctgggctttggttactgcccg
tttttctcaatttcaggaaccggactttcaaaagaatatgcggagaaattcattcaggaa
ttggtatccacagcagcaaatttacatcttcctatcgatggcattgtcatgatttttgac
agtctcagctactccaaaagctgcggaaaaaccggacaccactataaggacggcctcgcc
tataagtttgaggatgatacctacgaaactttcttgcgtgaaattgaatggacaccgacc
agattcggagagattgctccggtcggcatcttcgataccgtggagattgacggctgtgat
gtttccagagcttcccttcataatctgacctttatcaaaaatctggagcttgtacccgga
tgccggattcttgtttccaaacgaaacatgatcatcccacatatagaggataatctggat
cgtggaaggtataccgacatcacgcctccggtctgcccttgctgtggttccaaaaccaga
acctacagccgtaagaccagcgacggtcgcaccgtagaaactctgcattgtgataatccg
cagtgcgacagccagatcacaagaaggtttgtccattttgccagcaagaaggcaatgaac
atcgaaggactgtcagaagccactttagaaaaattcctgaatctgggctatctgcactct
tttcaggacatctatcatctggaggaacaccgggaagatattgtggcactggacggatat
ggtgagaaatctttcgaccgcttgtgggaatccatcaacgccagccggaggaccagcttt
gtccgctatctggtttccatggatattcctatgatcggcagaaccaaaagccggattctg
gacaccgtattttccggaaatttaactgcatttgaacaggcggctgtcggagattacgac
ttcactcagttagaggattttggcgaaatcttaaatcacaacatccattcctggtttgca
gatgaagcaaatcttgatttatggaaaaacttacagaacgaattcacatttgaacaaaga
aaggaagagaccattatgacaaaagaaaacaaatttacaggatgtaccatcgtagcaaca
gggaaactggagcattttaccagagacggtatcaacgataagattctggagcttggtgcc
aaacctggcagctctgtaacaaagaaaaccgattacctgatctgcggggaaaaagccggc
agcaaactggcaaaagcccagagccttggtattccaattcttacagaagctgaatttttg
gagatgattgcataa
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