Bacillus megaterium NBRC 15308 = ATCC 14581: BG04_2579
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Entry
BG04_2579 CDS
T03825
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmeg
Bacillus megaterium NBRC 15308 = ATCC 14581
Pathway
bmeg03030
DNA replication
bmeg03410
Base excision repair
bmeg03420
Nucleotide excision repair
bmeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BG04_2579 (ligA)
03410 Base excision repair
BG04_2579 (ligA)
03420 Nucleotide excision repair
BG04_2579 (ligA)
03430 Mismatch repair
BG04_2579 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmeg03032
]
BG04_2579 (ligA)
03400 DNA repair and recombination proteins [BR:
bmeg03400
]
BG04_2579 (ligA)
Enzymes [BR:
bmeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BG04_2579 (ligA)
DNA replication proteins [BR:
bmeg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BG04_2579 (ligA)
DNA repair and recombination proteins [BR:
bmeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BG04_2579 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BG04_2579 (ligA)
MMR (mismatch excision repair)
DNA ligase
BG04_2579 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BG04_2579 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
HHH_3
Gly_reductase
DUF7037
5_3_exonuc
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AJI20183
UniProt:
A0A0B6AHU1
LinkDB
All DBs
Position
2397912..2399918
Genome browser
AA seq
668 aa
AA seq
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MEFETAKSRVQELRDLLNQYGYEYYVLDQPSVPDAEYDKLMNELIEIEESFPELKTADSP
TQRIGGQVLDAFEKVQHQTSMLSLGNAFNEEDLRDFDRRVRQAVGDEFSYVCELKIDGLA
VSLRYEDGYLVLGATRGDGTTGENITENLKTIRSIPLRIKEPLSMEVRGEAFMPRKSFKA
LNEAKMERDEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYAMTDTGELEIDSHSESLN
LLDELGFKTNKERQTCETIDDVIAYIESWQTQRPELSYDIDGIVVKVDSFDQQAELGTTA
KSPRWAIAYKFPAEEVVTKLVNIELTVGRTGVITPTAILEPVQVAGTTVQRASLHNEDLI
REKDIRIGDYVVVKKAGDIIPEVVNVIEEKRTGEEQEFTMPTHCPECESELVRLEEEVAL
RCINPSCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFREQLIKDVADIYTLTKHQLIEL
ERMGEKSADNLIAAIEASKENSLERLLFGLGIRHVGAKAAKTLAQHFETIDKLTKATYDE
LVAINEIGAKMADAIVAYFTQEEVQELIHELKEYGVNLTYKGPKLVSVENVDSVFAGKTV
VLTGKLEQLSRNEAKARIEALGGKVTGSVSKKTDLVVAGEEAGSKLTKANELEIEVWDEA
RLLTELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgagacagcaaaatcccgcgttcaagaattacgtgacttattaaatcaatat
ggctatgaatattatgtgttagatcagccatctgttccagatgcagaatacgataaatta
atgaatgagttaattgagatagaagaatcatttccagaattaaaaacagctgactcacct
actcagcgcatcggcggccaagtgctcgatgcgtttgagaaggttcagcatcaaacgtct
atgctaagtttaggaaatgcatttaatgaagaagaccttcgggattttgatcgccgagtg
cgccaagccgttggagatgagttttcttatgtatgcgaacttaagattgacggtcttgct
gtatctcttcgctatgaagatggatacttagtgctgggggctacgcgcggagacggtacg
actggtgaaaatattactgaaaacttaaaaacaattcgctctattccactgcgaattaaa
gaaccgttatcaatggaagttcgcggagaagcatttatgccgagaaaatcattcaaagca
cttaatgaagcaaaaatggaaagggatgaggttccgtttgctaacccgcgtaacgcagct
gcaggctcactgcgtcagctagatcctaaaattgcggcaaaacgtaatttagatatcttt
gtatatgccatgactgatacaggagaattagaaatcgactctcacagcgaaagtttgaat
ttactcgatgagcttggttttaaaacaaataaggaaagacagacatgtgaaaccattgat
gatgtgattgcttacatcgaaagctggcaaacgcaacgtccagaactatcttatgatatt
gatggcattgttgtaaaagtagattcatttgatcagcaggctgagcttggaacaacggcc
aaaagtccacgttgggctattgcttataagtttcctgctgaagaagttgtaaccaagctt
gtaaatattgagctgacggtaggccgtacaggtgtcattacgccaacagctattttggag
cctgttcaagtagcaggtacgacggtacagcgtgcgtctcttcacaatgaagatttgatt
cgtgaaaaagacattcgcatcggagattatgtcgtagtgaaaaaagcaggagatattatt
cctgaggtagtgaatgtgattgaggagaagcgaacgggagaagagcaagagtttacgatg
cctactcactgtccggaatgtgaaagtgaactggtgcgtttagaagaagaagttgcgctt
cgctgcattaatccaagctgtcctgctcaaattcgtgaaggacttattcatttcgtgtcc
cgcaatgcgatgaacattgatggacttggtgaaaaagttatatcgcaattatttcgcgaa
cagttaattaaagacgtagcggatatttatacgctgacaaaacatcagttaatcgagctt
gagcgcatgggtgagaaatctgctgataatttgattgcagccatcgaagcatcgaaagaa
aattcgcttgagcgtttgctttttggtttgggcattcgccatgtcggagcaaaagctgca
aagacgttagctcagcactttgaaaccatagacaagttaacaaaagcaacgtatgatgaa
ttagtggcaattaatgaaattggtgccaaaatggctgatgctattgttgcttactttaca
caagaagaggttcaagaacttatacatgaattaaaagagtatggagtaaaccttacatac
aaaggacccaagcttgtaagtgtagaaaatgtagattctgtttttgctggtaaaaccgtt
gtattaacaggtaagcttgaacagctatctcgcaatgaggcaaaagcacgaattgaagca
cttggcggtaaagtcacaggaagcgtaagtaaaaagacagaccttgttgtggcaggggaa
gaggctggttccaaactgacaaaagctaacgagcttgaaattgaagtatgggatgaggca
aggctacttacggaattaaataaataa
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