Botrimarina mediterranea: Spa11_38990
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Entry
Spa11_38990 CDS
T09862
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmei
Botrimarina mediterranea
Pathway
bmei03030
DNA replication
bmei03410
Base excision repair
bmei03420
Nucleotide excision repair
bmei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Spa11_38990 (ligA)
03410 Base excision repair
Spa11_38990 (ligA)
03420 Nucleotide excision repair
Spa11_38990 (ligA)
03430 Mismatch repair
Spa11_38990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmei03032
]
Spa11_38990 (ligA)
03400 DNA repair and recombination proteins [BR:
bmei03400
]
Spa11_38990 (ligA)
Enzymes [BR:
bmei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Spa11_38990 (ligA)
DNA replication proteins [BR:
bmei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Spa11_38990 (ligA)
DNA repair and recombination proteins [BR:
bmei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Spa11_38990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spa11_38990 (ligA)
MMR (mismatch excision repair)
DNA ligase
Spa11_38990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spa11_38990 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
BRCT_2
Acetyltransf_6
CCDC106
RUBY_RBDX
INCENP_ARK-bind
Motif
Other DBs
NCBI-ProteinID:
QDV75679
LinkDB
All DBs
Position
complement(4933775..4936087)
Genome browser
AA seq
770 aa
AA seq
DB search
MEEIQRLRQIIREHDRRYYVEAAPSISDREYDALLERLRALEAEHPELLTADSPTQRVGG
DPIAGFKTVAHARRMYSIDNSYDEEELTRWAQRCFEALDPELQQINERLKELDERDADLK
GKRDAESKQSREALASDRTALQQQRADRLAAAAAEGYPLPGGYVAEPKVDGVAASLRYER
GVLVQGLTRGDGYRGDDITHNLRTLRSVPLVLEGDAPEVLEVRGEVYMPREEFDRINREL
AAEDKELFVNPRNATAGTLKQLDPKNVERRGLRFVLHGYGELSEDVNIASHVELVAAAQK
LGLITSPLSKQFGTIKEVVGYVDWFEKEKDLLPYNVDGVVVTVNQFALQERLGYTSKFPR
WRLAYKYATEQAATELLEIEWQMGKTGKLTPRAKMTPVFVAGTTVQHATLHNVGELRRKD
VRIGDTVIIEKAGEIIPQVVRVLDPERADRNEPVELPTSCPICGHTLEMEYDQRRQNDIA
QWAKRVEREKQLAAKEDREPETIAEPPPLSELDESGRYCPNAECPGQLKERLIHFAGRGQ
MDIEGLGEKVVEQLLDAGLVHTYGDLFRLHTKRDELLALERMGAKKVDNLLAGIEAAKDR
GLTRVLAALAIRHVGSSGSRILAEYYGSIDALTAASVAEIENFKINGAESGIGPEIAKSL
HDYLHSESGQAIIEDLRNEGVKLSEDAKPQAAGSGPLLGKTLVVTGTLQRHSRNEAHDLI
AKAGGKAASSISGSTDYLVAGEKAGSKLDKAAKLGVKVVTEEEFEQLLGL
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
gtggaagagattcaacgcctccggcagatcattcgtgagcacgatcggcgttattacgtc
gaggcggcgccgagcatttcggaccgtgagtacgacgcgttgctggagcgactgcgcgca
ctggaagcagagcatccagagctgctcacggctgacagcccgacgcagcgtgttggcggc
gatccgatcgctggcttcaaaacggtcgcccacgcgcggcggatgtactcgatcgataac
tcgtatgatgaggaagagctgacgcgttgggcgcagcgctgcttcgaggcgctcgacccg
gagcttcaacagatcaatgagcggctgaaggaactcgacgaacgcgacgccgatctcaaa
ggcaaacgcgacgcggagtcgaagcagagccgtgaggcgctagcgagcgaccggacagcg
ctgcaacaacagcgagccgaccgcctcgccgcggcggcggccgagggctatccgttgccg
ggcggctacgtcgccgaacccaaggtcgacggcgtggcggcgagcttgcgctacgaacgc
ggcgtgctcgtgcagggccttacgcgtggcgatggctatcgcggtgacgacatcacgcac
aacttgcggacactacgcagcgtgccgctggtgctcgaaggcgacgcgcccgaagttctt
gaagtgcgtggcgaggtctacatgccgcgtgaggagttcgaccgcatcaaccgcgagctc
gccgcggaagacaaggagctgttcgtcaatccacgcaacgccacggcggggacgcttaag
caactcgaccccaagaacgtcgaacgccgtggcctgcggttcgtgctgcacggttacggt
gagctgtcggaagacgtaaacatcgcttcgcacgtcgaactggttgccgccgcgcagaag
ctcgggttgatcacgagcccgctgtcgaagcaattcggcacaatcaaagaggtcgtcggc
tatgtcgattggttcgagaaggagaaggacctcctaccgtacaacgtcgatggcgttgtc
gtcacggtgaatcaattcgcactgcaagagcggctcggctacacgagcaagttcccacga
tggcgcctcgcttacaaatacgccaccgagcaagcggccaccgagctgctggagatcgag
tggcagatgggcaagaccggcaagctcacaccgcgggcgaagatgacgccggtcttcgtc
gccggcacgacggtgcagcacgcgacgctacacaacgtcggcgagctgcggcgcaaggac
gtccggattggcgacaccgtgatcatcgaaaaggcgggggagattatcccgcaagtggtg
cgtgtgctcgacccagagcgcgcggatcgcaacgagccggttgagttgccgacgagctgc
ccgatctgcggccacaccttggagatggagtacgaccagcggcggcaaaacgacatcgcc
cagtgggccaaacgcgtcgagcgcgagaagcaactcgccgcaaaagaggatcgcgagccg
gagacgatcgccgagccgccgccgctatcagagcttgacgaatcgggccgctactgcccc
aacgccgagtgcccggggcagctcaaagaacgcctcatccacttcgccggtcgcgggcag
atggacattgaggggctcggcgagaaggtcgttgagcaactcctcgacgccggcctcgtc
cacacctacggcgacctctttcgattgcacacgaagcgtgacgagctgctggcgctcgaa
cgcatgggcgccaagaaggtcgataacctgctcgccggcatcgaagcggcgaaggaccgc
ggcttgacgcgcgtcctggcggcgttggcgatccgccacgtcggttcgagcggttcacgc
atccttgcggagtactacggatcgatcgacgcgctgacggcggcgagcgtcgcggaaatc
gagaacttcaagatcaacggcgccgagtcgggcatcggacccgagatcgccaaatcgctt
cacgactacctgcacagcgagtcgggccaagccatcatcgaggacctgcgcaacgaaggc
gtcaaacttagcgaggacgctaagccgcaagcggctggcagcggcccgctgttaggtaag
actctcgtggtaacaggaactctccaacgccacagccgcaacgaagcccacgacctcatc
gccaaagccggcggcaaagcggccagcagcatcagcggctcgaccgactacttggtcgcc
ggcgagaaagcgggcagtaaactcgacaaagccgcgaagctcggcgtgaaggttgtgacg
gaagaagagttcgagcaactccttgggttataa
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integrated database retrieval system