Borrelia miyamotoi CT14D4: RJ61_02710
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Entry
RJ61_02710 CDS
T03577
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmiy
Borrelia miyamotoi CT14D4
Pathway
bmiy03030
DNA replication
bmiy03410
Base excision repair
bmiy03420
Nucleotide excision repair
bmiy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RJ61_02710 (ligA)
03410 Base excision repair
RJ61_02710 (ligA)
03420 Nucleotide excision repair
RJ61_02710 (ligA)
03430 Mismatch repair
RJ61_02710 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmiy03032
]
RJ61_02710 (ligA)
03400 DNA repair and recombination proteins [BR:
bmiy03400
]
RJ61_02710 (ligA)
Enzymes [BR:
bmiy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RJ61_02710 (ligA)
DNA replication proteins [BR:
bmiy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RJ61_02710 (ligA)
DNA repair and recombination proteins [BR:
bmiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RJ61_02710 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RJ61_02710 (ligA)
MMR (mismatch excision repair)
DNA ligase
RJ61_02710 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RJ61_02710 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
PTCB-BRCT
HHH_2
DNA_ligase_ZBD
DNA_ligase_A_M
HMBD
Motif
Other DBs
NCBI-ProteinID:
AJA58689
LinkDB
All DBs
Position
564961..566970
Genome browser
AA seq
669 aa
AA seq
DB search
MVKDIEDEILSLRNIIKKWNKEYYVDFSPSVNDLIYDKALLRLQDLENKYPEYKTLDSPT
LRFGSDLLNSFEEVEHSFPVLSLDKAYDIKALLLWIKKMQLDSSRLGFCNVISVEPKIDG
CSIVLYYKDGILQRALTRGDGRVGNDVTENVRTIKNIPLRIEQKVELVLRGEIYITKENF
LKINQMLKNPYVNARNLASGVLRRINSKEVANFPLDIFVYDILYSQLKFSMSSHCAFNKL
KKFGFKVNSCCIFSGKNLEEDIISHVKKIERQRDSFEYEIDGVVLKVDSFPLRKILGSTS
HHPKWSIAYKFESFIGLSRVIDIVVQVGRSGKITPVVHVEKVFVAGAFITNASLHNQDYI
DSIGLNIGDVVAISRRGDVIPAVELVVEKLAVGNFKIPNDCPSCKMTLVKEGAHLFCMNR
FCSCRRIEQIKYFCSKKCMNIIGLSEKTIEFLFKMNFISSEIDLYTFDFDRLINLRGFNL
KRVSNLKRSIEDSKGRAFRKLLLSVGIKELGANTVLLLIGSNLNSFDIISTLCKNKEDAL
VKLLRIKGIGENIALNIIEAFNDKTILYKFNFFKELGFAMEEDNAHYSLDTSFLFGKKFC
ITGSFEGFHRDVLVEKITRKGATFKSSVTKSLDFLLVGDNPGLKVNKAIDLGIKIFGLSD
IRGFIDLDD
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaagatatagaagatgaaattttaagcttgagaaatattatcaaaaaatggaac
aaagagtattatgttgatttttctcctagtgtgaatgatttgatttatgataaagctctt
ttacgacttcaggatttagaaaataaatatcctgaatataaaacattagattctcccact
ctgagatttgggagcgatcttttaaatagttttgaagaagtagaacattcttttcctgta
ttaagtttggataaggcttatgatattaaagcgttattattgtggattaaaaaaatgcag
ctagatagctctagattagggttttgtaatgttatctcggttgagcccaaaattgatgga
tgctcaattgttctttattataaggatggtatacttcaaagagccttgactaggggagat
ggaagggttgggaatgatgttactgagaatgttagaacaattaagaatattcctttgcgg
attgagcaaaaagttgaattggttttgcggggtgaaatttatattactaaagaaaatttt
ttgaaaataaatcaaatgttaaaaaatccttatgttaatgctagaaatttagcctcaggt
gtactgaggaggataaatagtaaggaagtggctaatttccctttagatatttttgtttat
gatattttatattctcaattaaaatttagtatgagtagtcattgtgcttttaacaagctt
aagaaatttggatttaaagttaattcttgctgtatatttagtggtaaaaatttggaagaa
gatattattagccatgtaaaaaagatcgaaaggcaaagagattcttttgaatatgaaatt
gatggtgttgtgctaaaagttgatagctttcctttaagaaagattttaggatctacttct
catcatccaaagtggtcaatagcttataaatttgaatcttttataggtttgagtagggtt
attgatatagtcgttcaggttggtcgcagtggaaagattactcctgttgtacatgtagag
aaagtttttgttgctggagcttttattactaatgcaagtttgcataatcaagattatata
gattctattggtttaaatattggagatgttgttgcgatctcaagacgtggagatgttatt
cctgctgttgaattggtggtagaaaagcttgcggttggtaattttaaaattcctaatgat
tgtccttcatgtaaaatgactttagtaaaagaaggagcacatcttttttgtatgaataga
ttttgttcttgcagaagaattgagcagataaagtatttttgtagtaagaagtgcatgaat
attataggactttcggagaaaacaattgagtttctttttaaaatgaattttatatcttct
gaaatcgatctttacacttttgattttgatagacttattaatctgagaggttttaatctt
aaaagagtcagtaatttaaaacgttcgattgaagatagtaaaggtagagcatttagaaag
ttgcttcttagtgtgggaattaaagaacttggagcaaatacagtattattattgattggt
agcaatttaaactcatttgatataattagtactctttgcaaaaacaaagaggatgctctt
gtaaaacttttaaggattaagggaattggggaaaatatagctttaaatattattgaagca
tttaatgataagactattctttataagttcaatttttttaaagaattaggatttgctatg
gaagaggataatgctcattattctttagatacttcttttttatttggtaaaaaattttgc
attacaggttcttttgagggttttcacagggatgttcttgttgaaaaaattactaggaaa
ggtgctacttttaaaagttcagttactaagagtttagattttttgcttgttggagataat
cctggattaaaagtgaataaagccattgatttgggcattaaaatttttggtctttctgat
attagaggtttcatagacttggatgattga
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