Bacillus velezensis JS25R: NG74_00690
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Entry
NG74_00690 CDS
T03423
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmp
Bacillus velezensis JS25R
Pathway
bmp03030
DNA replication
bmp03410
Base excision repair
bmp03420
Nucleotide excision repair
bmp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NG74_00690 (ligA)
03410 Base excision repair
NG74_00690 (ligA)
03420 Nucleotide excision repair
NG74_00690 (ligA)
03430 Mismatch repair
NG74_00690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmp03032
]
NG74_00690 (ligA)
03400 DNA repair and recombination proteins [BR:
bmp03400
]
NG74_00690 (ligA)
Enzymes [BR:
bmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NG74_00690 (ligA)
DNA replication proteins [BR:
bmp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NG74_00690 (ligA)
DNA repair and recombination proteins [BR:
bmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NG74_00690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NG74_00690 (ligA)
MMR (mismatch excision repair)
DNA ligase
NG74_00690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NG74_00690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
5_3_exonuc
HHH_8
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AIU80826
LinkDB
All DBs
Position
662338..664347
Genome browser
AA seq
669 aa
AA seq
DB search
MMDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELIAIEEEHPELRTPDS
PTQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGL
AVSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFE
ALNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGL
DFLHELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYT
AKSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDL
IKEKDIRILDKVVVKKAGDIIPEVVNVLIEQRTGEEKEFNMPTSCPECESELVRIEGEVA
LRCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIR
LERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEE
ELLAVDEIGEKMADAVVTYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKT
IVLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLLIAGEAAGSKLTKAQELNIEVWNE
AQLLGELKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcag
tacagttatgaatattacaccttagatgaaccgagcgtgccggattccgagtacgacaga
ctgatgcaggagctgattgccatagaggaagagcacccggagctcagaacgcctgattcg
cccacacagcgggtcgggggagcggtgcttgaatcgtttcaaaaggtgcagcacggcacg
ccgatgctcagtctcggcaacgcatttaacgatgatgatctccgcgattttgaccgccgc
gtccgtcaggctgtcggtgacggcgtcgcttataatgtggagctgaaaatagacggtctt
gctgtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacgga
acgacgggcgaagatatcacggaaaacttaaaaacgatccgcaacattccgctgaaaatg
aaacggaatctttccatagaagtgcgcggagaggcgtacatgccgaaacagtcatttgaa
gccctcaatgaagaaaggctgaaacatgaagaggagccgttcgccaatccccggaacgcg
gctgcgggctcactcagacagctcgatccgaaaattgcagcgaaacgaaatcttgacatc
ttcgtctacagtatagcggagcttgacgaaatgggtgtggaaacacagagtcagggcctg
gattttctgcatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgccacgata
gatgaagtcattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccgtatgaa
attgacggaatcgtcatcaaagtcgattcgctcgaccagcaggaagagctcgggtatacg
gcaaaaagcccgcgctgggcgattgcttataaattcccggcggaagaggtcgtgacaaaa
cttctcgatatcgaactgaatgtcggaagaacgggcgtcattacgccgaccgccgttctg
gaaccggtaaaagtcgcgggaacgacggtctcaagagcatcccttcataacgaagattta
attaaagagaaggatatccgcattctcgataaagtggtcgtcaaaaaagcgggcgacatc
atccctgaggtcgtcaatgtcttaatcgaacagcggaccggggaagaaaaagaattcaat
atgccgaccagctgtcctgagtgcgaaagcgagctagtgcgcatcgaaggagaagtcgcg
ctgcgctgcatcaatccggaatgtccggcgcagatcagagaaggcctgattcactttgtc
tcacgcaacgcgatgaatattgacggactcggagaacgtgtcatcacacagcttttccgt
gaacatctcgtccgtaatgtcgctgatttgtataagctgacgaaagagcaggtcatccgg
cttgagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaa
gagaattcgctggaacgcctgctgtttggtctcggcatccgttttatcggctcaaaagcg
gccaaaacactcgccatgcattttgaaagcctggaaaatctgaaacaagccacggaagaa
gagctgcttgcggtagatgaaatcggcgaaaaaatggccgatgccgttgtcacctatttc
cgcaaagaagaaatgcttgagctattgaatgaacttgaggaactcggtgtgaacacactc
tacaaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggcaaaacc
atcgtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaggcgcagattgaa
gcgctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttgctgattgccgga
gaagcggccggaagcaagctgacaaaagcgcaggaattaaacattgaagtatggaatgaa
gcacagctattgggagagctaaagaaataa
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integrated database retrieval system
