Bacteroides mucinivorans: VCM39_09700
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Entry
VCM39_09700 CDS
T11858
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmuc Bacteroides mucinivorans
Pathway
bmuc03030
DNA replication
bmuc03410
Base excision repair
bmuc03420
Nucleotide excision repair
bmuc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VCM39_09700 (ligA)
03410 Base excision repair
VCM39_09700 (ligA)
03420 Nucleotide excision repair
VCM39_09700 (ligA)
03430 Mismatch repair
VCM39_09700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmuc03032
]
VCM39_09700 (ligA)
03400 DNA repair and recombination proteins [BR:
bmuc03400
]
VCM39_09700 (ligA)
Enzymes [BR:
bmuc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VCM39_09700 (ligA)
DNA replication proteins [BR:
bmuc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VCM39_09700 (ligA)
DNA repair and recombination proteins [BR:
bmuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VCM39_09700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VCM39_09700 (ligA)
MMR (mismatch excision repair)
DNA ligase
VCM39_09700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VCM39_09700 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF5689
RNA_pol_A_CTD
BRCT_2
EAD10
Motif
Other DBs
NCBI-ProteinID:
XNS72592
LinkDB
All DBs
Position
complement(2646090..2648090)
Genome browser
AA seq
666 aa
AA seq
DB search
MTVKEKIEELRAELHRHNYNYYVLNTPEISDKEFDDKMRELQDLEQAHPEYKDDNSPTMR
VGSDLNKNFTQVAHKYPMLSLGNTYSETEVADFYERVKKALNDDFEICCEMKYDGTSISL
TYENGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPQSFEIRGEILMPWDVFEE
LNREREAREEPLFANPRNAASGTLKSQNSSVVASRKLDAYLYYLLGENLPCDGHYENLQE
AAKWGFKISNAMQKCHTLEEIFDYIKHWDTERKNLTVATDGIVLKVNSLKQQKNLGFTAK
SPRWAIAYKFQAERALTRLNMVTYQVGRTGTVTPVANLDPVQLSGTIVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKITGVDTSARSFMIGEKVNFITNCPECGSKLIRYEGEAAH
YCPNETACPPQIKGKIEHFISRRAMNIDGLGPETVDMFYRLGLIQNTADLYKLTAEDIKG
LDRMGEKSAENIINGIAQSKEIPFERVIFALGIRFVGETVAKKIAKAFKNIEELEDADLE
TLVSIDEIGEKIAQSILNYFANESNRELVNRLKEVGLQLYRTAEDLSGHTDKLAGQSIVI
SGVFTHYSRDEYKDLIEKHGGKNVGSISAKTSFILAGENMGPAKLEKASKLGIRIMNEEE
FLELIS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaaggaaaaaatagaagaactgcgtgccgaacttcaccggcacaattataac
tattacgtattgaatacccctgaaatatcagataaggaattcgacgacaagatgcgtgag
ttacaagacctggaacaggcacaccctgagtacaaggatgataactctccgacaatgcgt
gtaggaagtgacctcaataagaattttacgcaagtagcacataaatacccaatgttatct
ttgggaaacacatactcggaaactgaagtagcagacttctacgaacgagtaaaaaaagcc
ctgaatgatgattttgagatatgttgtgaaatgaaatatgatggaacttcaatttcatta
acatacgaaaacgggaagctgatacgagctgtaactcgcggtgacggagaaaaaggagat
gatgtaacggataatgtaaaaacaatccgtagcattccgcttgtactccatggcgacaat
tatccccagtcttttgagatacgtggagaaattcttatgccatgggatgtattcgaagag
ttaaaccgtgaaagagaagcacgtgaagaacctctattcgctaatccgagaaatgcagct
tcgggaacactaaaatcgcaaaactcctcagtcgtagcttcccgcaaactagacgcctat
ttatactatctgcttggagaaaatctgccttgtgacggacattatgaaaatctgcaagaa
gcagccaaatggggcttcaaaatttcgaatgccatgcaaaagtgtcacaccttagaggaa
atttttgattatatcaaacattgggatacagaacggaaaaatctgacagttgccacagat
ggtattgtgctgaaagtaaacagcttgaaacaacaaaaaaacttaggatttacggccaaa
tctcctcgctgggctattgcatacaaatttcaggcagaacgtgcacttacccggttaaac
atggtaacatatcaggtaggaagaacggggaccgtcactccggtagccaatttggacccc
gtacagctgtccggcaccattgtaaaacgcgcttctttgcataatgcggatatcattgaa
ggacttgatctccacattggcgatatggtatacgtggagaagggtggagaaattattcct
aaaattacaggggtagatacttctgcacgttcattcatgataggtgaaaaagtgaacttt
atcacaaattgtcccgaatgcggaagtaaattaatacgttatgaaggcgaagcagctcat
tattgccccaacgaaacggcttgtccaccacagatcaaaggcaagattgaacactttatc
agtcggcgggctatgaacatcgacggacttggtcctgagacagtagacatgttttatcgc
ctgggactaattcagaatacagctgatttgtacaaactgactgcagaagacatcaaagga
ttggaccggatgggggaaaagtctgccgaaaatattatcaatggaattgcccaaagcaaa
gaaattccttttgaacgtgtcatcttcgcattaggtattcgttttgtaggtgaaactgta
gcaaagaaaatagccaaagccttcaaaaatatagaagaattggaagatgcggatctcgaa
accctggtaagcattgatgaaatcggtgaaaaaattgcgcaaagcattttaaactatttc
gcaaacgaatcaaaccgcgaacttgtgaatcgcctgaaggaagttggtcttcagctctat
cgtacagcagaagatctgagcggacacaccgacaaactggcaggtcagtctattgttatc
agtggtgttttcacccactattcgcgagatgaatacaaagatcttatagaaaaacatggc
ggtaagaatgtaggaagtatttcagctaagaccagctttattctggcaggtgaaaatatg
ggacctgccaaacttgaaaaagcaagtaaactgggcatcaggataatgaacgaagaggaa
tttttagagctcatatcgtaa
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