Balaenoptera musculus (blue whale): 118906935
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Entry
118906935 CDS
T09887
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bmus
Balaenoptera musculus (blue whale)
Brite
KEGG Orthology (KO) [BR:
bmus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bmus03036
]
118906935 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
bmus03400
]
118906935 (SMCHD1)
Chromosome and associated proteins [BR:
bmus03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
118906935 (SMCHD1)
DNA repair and recombination proteins [BR:
bmus03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
118906935 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
Motif
Other DBs
NCBI-GeneID:
118906935
NCBI-ProteinID:
XP_036730806
UniProt:
A0A8C0D8A3
LinkDB
All DBs
Position
14:complement(36027535..36162191)
Genome browser
AA seq
1997 aa
AA seq
DB search
MAAAGGGGPSVGTGEGGGGDGYRTVYLFDRREEESELGDRALQVTERSDFAAFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGVRRIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLQHLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKTPKIINLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSPSGSKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PLEFQDEFGHTSQLSTDIQPVFEASGLSLHYEEITNGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIVHCKFSGAPNLPLYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLVDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPALVPQVKISLIKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHIMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAVPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPEIQPATPAVS
NVRSVASRTLVKDLYLRITDDYNNHTGIDLVGTVMATIKGSNEEDDTPLFIGKVRTLEFP
FVKGSSEITSLVLAENSPGRDSTEYFIVFEPRLPGLSRTLESYILPFMFYNDVKKQQQMA
ALTKEKDQLSKSIIMYRSLFDASKQLLDEMKCQVEEAKLKEAQLRNELKTHNIDIPTTQQ
MPHIEALLKRKISEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKSYFKPI
GDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCRLGSVNK
DLNGQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPIPPKR
MRREATRQNRIITKTDV
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggggaccggagagggcggcggaggcgac
ggctacaggacggtgtacttgtttgaccggcgggaggaggagtcggagctcggggaccgg
gcgctgcaggtcacggagcgctcggacttcgcggcgttccgcgcctcagtgtgtcagaca
cttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgaaactgttaaagatggagtcactctgtacctgctacagtcagtc
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ttggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttaccattt
gctcttgcagaattaattgataattcattgtctgccacttctcgtaacactggtgttaga
agaatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccactacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaggatgttcat
gaacttgtactttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agcggatatattagaaacagaaagccgtctgattctgttcacattacaaatgatgatgaa
agatttctacaacatcttatctcagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggggtacaaccagaacacatacagtacttgaaaaattatttccttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaagacacctaagattatcaacctaagggaaatacaagatgacatgcagacgttgtat
ataaatacagcagccgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattatccgatatcacccttttttatatgatagagaaacgtaccctgatgatcca
tgctttccatcaaaattaaaagatgaagacgatgatgatgactgtttcatacttgagaaa
gcggcaagagggaaaagacctatttttgaatgtttttggaatggacgactaataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccgatt
gagtgctacaataggatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacctttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaagattgacagagaatttgctttatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcgacttattcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
ttttatggaagcattgtaaaattttttctttatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaagcactgtatgatgaaataaaaact
gtgccaattgcaaagctggataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccgaatgagattaggcctgctggaacccccattggtgcgttaagaattgaaatattg
aataaaaagggggaagcaatgcaaaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatactacactctccaagtggaagtaaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacattgaaattacaagttgtactgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatctaaagcaattaaattttctgtcaaagagggtaaacca
gagaaattttcatttggtcttttggatcctccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactatcaactgatattcagcca
gtttttgaagcaagtggtttatctttacattatgaagaaataaccaatggaccaaattgt
gtcattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ctgaaggttattcttccgggtttaaaagaagactcacagattttgaaaattagattactg
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacagcacaa
cccaaattgattgttcattgtaagttttcaggtgctccaaaccttccactctacgttgtg
gattgcagtagttctggaaccagtattttgtcaggaccagcaattcaagttcagaatatc
aaaaaagaccagactcttaaagcaaaaattgaaatacctagttgtaaagatgtggcacct
gtggagaagactattaagttgcttcccagtagccatgttgcaagattacagatattcagt
gtagaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcagga
gatattatgcataaccttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttagcagagaaaattaaagttaattggactcctgagattaacaaagagcac
ttactacagggtctgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgctat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgaattaaaaggaggaaaaacagtacagatg
ggccaagagcttcaaggagaaatagttataatagttacagatcagtatggaaatcaaatt
caggcattttcaccaagttctctatctgccttgggaattgctgggattggacttgatagc
tcacatttgaaaactacttttcaggaaaatacacaaagtataagtgtgagaggcatcaaa
tttattccaggtccccctggaaataaggatctttgttttacttggcgtgagttttctgac
tttattcgagtgcagctaatttctgggccaccagctaaacttctccttgtagactggcca
gagttaaaggagtccattccagtgattaacggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacttgtgccacaggttaaaataagccttata
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaaccgatgaaaggggc
agggctaatttgggagtgttcagtgtttatgcccctagaggagaacatattatgcaggtt
aaagccatttataacaagaataccatagaaggacccataattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggaaactgtcaaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaggataatgacaaggaagat
ggctgcttctacttcagggataaagcagttcctaacaaagtggggacatattgtatccag
tttggttttatgatggataaagcaaatatccttaacagtgagcagattatagtggatgtt
ctacctaatcaacctgtgaagttagttcctgaaattcagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggaccttggtcaaagatttgtatcttcgtattacggat
gactacaacaatcatactggaattgatttggttggcactgtaatggctaccatcaaaggt
tctaatgaggaagatgacaccccactctttattgggaaagttagaacacttgaatttccc
tttgtgaaaggttcatctgaaatcacgagtctagttctggcagaaaatagtcctggaagg
gatagcactgagtattttattgtgtttgagcctcggctaccaggcttatcaagaacatta
gaatcatatatcctaccatttatgttttacaatgatgttaagaagcagcaacaaatggca
gcacttacaaaagaaaaggaccaattatctaagtctattataatgtatagaagtttattt
gatgccagcaaacagcttcttgatgagatgaagtgccaagttgaagaagcaaaattaaaa
gaggcccagttgcgaaatgaactaaaaacacacaatattgacattcctacaacacaacag
atgccacacattgaagcacttttgaagagaaagatatcagaacaggaagaactaaagaaa
aaacccagaagatcatgtactcttcctaactatactaaaggcagtggagatgttttggga
aagattgcacacttggcacaaattgaagatgatagagccgcaatggttatttcttggcat
ctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacgtcgtatctat
gacgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataagaagactctt
ccagattggaaaagacctctgcctcattaccgaaatggaaaatcgtattttaaacccatt
ggagatcccgtctttgcccgagatttgttaacatttccagataacgtagaacattgtgaa
acagtatttggtatgctgttaggagacaccattattttggataatttggatgctgccaat
cattatagaaaagaggttgttaaaattacacactgtcctacactgctgaccagagatgga
gatcgcattcgaagtaatggaaagtttgggggccttcagaataaagctcctccaatggat
aaacttcggggaatggtctttggagctccagtaccaaaacagtgcctgatcttaggggaa
caaatagatcttcttcagcagtaccgcactgctgtgtgcaggttgggcagtgtgaacaag
gaccttaacgggcagttggaataccttcacactccggatatgaagaagaaaaaacaggaa
cttgatgaacaagaaaagaatctcaaactgatagagcaaaaactaggtatgactcccaca
cgtaagtgtaatgactcactgcgtcatccaatgacagactgtccaattcctcctaagaga
atgagaagagaagctacaagacaaaataggattataaccaaaacagatgtgtga
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integrated database retrieval system
