Brassica napus (rape): 106346269
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Entry
106346269 CDS
T04128
Name
(RefSeq) transcription factor PIF3
KO
K12126
phytochrome-interacting factor 3
Organism
bna
Brassica napus (rape)
Pathway
bna04075
Plant hormone signal transduction
bna04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
106346269
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
106346269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bna03000
]
106346269
Transcription factors [BR:
bna03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
106346269
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
106346269
NCBI-ProteinID:
XP_013640994
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Position
A6:3650798..3654036
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AA seq
536 aa
AA seq
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MLRGSRFLSSPPASSSSVSCTPLFSQVSVCKGNTMPLFELFRLANANVEYAQDENTSPPV
DEVVELVWENGQISTQSQSSRSRNIPPPQSIHQARAREIGTGSKATMVDEIPMSVPSLMT
GLSQDDDLVPWLNPHQSLDGYCSDLLHDVSPVTVNEQESDAFPRRNNGNELAPAASSSQF
NGFDSHSLYGTGRARDPVSQPAKPDQFTQRQEPLVTSNKPGLLNFSHFLRTAALAKTNNV
SKEKSPQSPPNVFQTRVLGAKDKVLNEPKDNNQKTCLVSEDSNRKEQESEKAVVCSSVGS
GNSLDGPSESPLKRKHLDVQDIECHSEDVEGESGDGRKETAPSRTGIGSKRSRSAEVHNL
SERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQFMSMASGYYMPPV
MFPPGMGHHYQAAAMAMGMGMPYAMGLPDMSRGGPSVNNGPQFQVPGMQQPVAMAIPRVS
AGGFFGSSTVEMNKSDDGSTRDLSGGTKDQTTTKDNNSLRPIKRKQASSDQFCGSL
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgaggatctcgttttctctcttcgccgccagcttcgtcttcttcagtttcttgt
acccctctgttttcccaggtctctgtctgtaagggaaacaccatgcctctgtttgagctt
ttcaggctcgccaacgctaatgttgaatatgctcaagacgagaacacttctccacccgtg
gatgaagttgttgagctggtttgggaaaacggtcagatctcaactcaaagccagtcgagc
agatcaagaaacatcccaccaccacaatctattcatcaagcaagagctagagagatcgga
actggctcaaaggccacgatggtggacgagatcccgatgtcagtgccctcactaatgacc
ggtttgagtcaagacgatgacttggttccgtggctgaaccctcatcaatcccttgatgga
tattgctctgatctcttgcatgatgtttctcctgttaccgtcaacgagcaagagagcgat
gctttcccgagaagaaacaatgggaatgaattagctccggctgcttcttcatctcagttc
aacggttttgattcacattctctgtatggaaccggtagagctagagatcctgttagccaa
ccagccaaaccagatcaattcactcagagacaggaaccgttagtaactagcaacaagcct
ggtttgctcaacttttcgcatttcttacgcacggcagctttggctaagactaataatgtc
tctaaagagaagagtcctcaaagcccgccgaatgtgtttcagactagagttcttggagct
aaagacaaggttctcaacgagcctaaggataataaccaaaagacttgcttagtttcagaa
gactcaaatagaaaagagcaagagagtgaaaaggctgttgtgtgttcttctgttgggtct
ggtaatagtctcgatggaccttctgaaagtcctttaaaaagaaagcatttggatgttcag
gacattgagtgtcatagtgaagatgttgagggagaatcaggagatggaagaaaagaaaca
gctccatctcgaacaggcattggttcaaagagaagccgctcggctgaagtgcataatctg
tctgaaaggagacggcgtgataggattaacgagaagatgcgtgctcttcaagaactcata
ccaaactgcaacaaggtggacaaagcttcgatgctagatgaagcaatcgagtatctaaag
tcacttcaacttcaagtacagttcatgtcaatggcgtctggttactacatgccaccggtt
atgttcccaccgggtatggggcatcattaccaagcagcagcaatggcgatgggcatggga
atgccttatgcaatgggcttgcctgatatgagccgtggaggtccctctgttaacaacgga
ccacagttccaggttcccgggatgcaacaaccagtggccatggctattccacgtgtctct
gctggtggtttctttggttcttcaacggtggagatgaataagagtgatgatggttcgact
agagatttatctggtggtactaaagatcaaacaacgacaaaggacaacaatagcttgaga
ccgattaagagaaaacaggcgtcttctgatcagttttgtggatcgttatga
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