Brassica napus (rape): 106348274
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Entry
106348274 CDS
T04128
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106348274
03400 DNA repair and recombination proteins [BR:
bna03400
]
106348274
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
106348274
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
106348274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
Motif
Other DBs
NCBI-GeneID:
106348274
NCBI-ProteinID:
XP_048591052
LinkDB
All DBs
Position
A6:21463619..21472293
Genome browser
AA seq
1661 aa
AA seq
DB search
MRLFIYSLSNSTSLYPLVSNTKTRFSIVLCVFFSSGCVFLQFYLCLSSQKMSNRRPLKRA
LVQVDDDEEEDKFYKLKILLPNGTNVTLTLNNPQPEMSMRNFVNLVKEEYEKTRKSCELS
GKMRKRIDWNLAAESYLDFNGEKIRGMVRLETFKPDMCNILRLDDGSGEATTMYENMWDL
TPDTDMLKELPENYSFETALADLIDNSLQAVWSCSPGNRRLISVDVLEDRISVFDSGPGM
DSSKENSIAKWGKIGASIHRAHKSKAIGGKPPYLMPFFGMFGYGGAYACMHLGMRTLVSS
KTKQSKKVFTLQLNKEALIGNRSTSGKNWKVDGGMRDPLEEEMKLSPHGSFTKVEIFEWN
CKIPEIYQLQCRLKDIYFPYIQYDEVSKTGRTLRPVEFQVHGEDLTEIVGGEVATTNLNS
KGEEFWFQIRFCEKRKGTSQEANARLKFLYFPIVHGKESIDIIMESLEKEGYKVSESFQA
FGRVSVRRLGRLLPEVPWVSIPFMERGARATTLQKCCQRVKCFVDLDAGFVPTPSKTDLA
SQNLFSVALKNFGSKSKEKDNGQLQKKKYIYIYISLVTRVELTLCSTDVSMVIHREGKSL
AYGQVEKGYEEWVLKMHKSYDEEDALGEDEATVIFDSLDKKALCISPDCEAVRVHKVMKR
KSKSWERGQKIKIMKGACAGVHKNDVYATIDYFLIENFEDETGGDARIICRQINFSEEEG
CMLSTIKGISKLEIRKSSSFPISIIDTEKCVLIDDNEWNRKLVKQKEKDPSRIDLLDEKD
CRTLKFNGETTIGASVCAGQTPPQQIVAVVRPASYTSSKMSKKLDQKHIVKVDGEMLMEV
ELQGTEMKSRVKNAKPLYSDRCFPTNRGGLHGLYIFQLESKIPHLFKKAGTYIFSFSVGN
SVTCKKKVIVKPSSKVGSWKLGGNQETINVRVGSSLPPLSIYCLDEYENQIPFTSVPSLE
VRLKARPEFEVPVYKTEANLDRGILKLKNMVVETDALDDIRPDYEATLEICSKDELFSVS
VACIVKPGPLKCVVENDTQALECLLPDSTVENFILEMFDEYNNHVAEGTNVPICTSGFFI
QDRMCLDLKVDSDGCIDLSGILKVTAGYGKPVSLSIMSGNKEIFKKESLVEIRELRLLTE
LPEYCTAGTNLTNLKFKVTDSYGIMDTSINNDDKSECFHTLSIESDSSSVDSTTRYAFVH
GSCKITSLSLPETEGAFSFKVFHSRHPELHMNLKIQLTPAQTFERDEIGCSEPNPRIYLT
PQSKMGSTTNPFVVPTQQTPSSEFLTQQTPPSQFRVLSIREMSSAISSQTAPVDMAQFSE
YTEILKAKLNSYTERISEANECLKCLEAEQEESVQELSALQASLEPHGVSFPECLSNKES
MMKHIEENHHNKAASVFCSLYRNAPASKSMLLSKEGVLGIVALLGSVASTPLSRVLSEYL
GDDTMLALVCKSTRPGPNIDPMLQAEAARLERSITSRFHVLCLGATSPWTGGLVENDPQR
KLAMDDPKLPDGDPIPGFIGYAVNMINLAEEELNNKTYKGHGLRETLFYGLFGKLQVYET
QTQVEEALLHISGDGAVSLDGFIAKGNEFICSGCSKPEIHFPITVRENEEEKWSNLEEAR
NRVRRVEKKLVAARCLLSKLEKKMNKANERYDSATKLSLES
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atgagactcttcatttactctctctctaactccacgtctctttatcctcttgtttccaat
actaaaactcgcttctctatcgtcctctgcgtcttcttctcatctggttgcgttttttta
cagttctatctctgcctttcctctcaaaagatgagcaaccggagaccgctcaagagagca
ctggttcaagttgatgatgatgaagaagaagataagttttacaaactcaagattctctta
ccaaacggcacaaatgtgacactcacacttaataacccacaacctgaaatgtcgatgagg
aatttcgttaatctggtgaaagaggagtatgagaaaactcggaagagctgtgagttgtca
ggaaaaatgaggaaacggattgattggaatctggctgctgaatcatatcttgactttaac
ggtgaaaagattagaggaatggttcgacttgagacttttaagcctgatatgtgcaatata
ctacgtcttgatgatgggtctggtgaagctaccactatgtatgagaatatgtgggatttg
acacctgatactgatatgcttaaagaactacctgaaaattatagctttgagactgctctt
gcggatctaattgataattctttgcaagctgtgtggtcttgttcccctggtaacagaaga
ctcattagtgtggatgttctagaagatcggatttcagtctttgattctggtcctggaatg
gacagtagcaaggaaaactcaattgctaagtggggaaaaataggggcttcaatacatagg
gcccacaaatccaaagctatcggaggcaaaccaccataccttatgccattctttgggatg
tttggatatggaggtgcatatgcgtgtatgcatttgggaatgcgtactttggtgtcttca
aagacgaaacagtccaagaaagtattcacactgcaactcaataaagaagctttgattggc
aatcgttctacctcaggaaagaactggaaggtcgacggtggaatgagagatcctttggag
gaggaaatgaagttatctcctcacggaagcttcacaaaggttgagatctttgaatggaat
tgtaaaatcccagagatatatcaacttcagtgcagacttaaggatatttattttccttac
atccagtatgatgaagtctctaaaacgggaaggactctgaggcctgttgagtttcaggtc
catggagaggatttaactgagatagtgggtggagaggttgccaccaccaacctaaactcc
aagggtgaagagttttggtttcagattcgattctgcgaaaaaagaaaagggacatcacaa
gaggcaaacgctcgtctcaagtttctatattttccaatcgtccatggaaaagaaagcatt
gatataattatggaaagcttagagaaggaaggatacaaagtttctgaaagcttccaagct
tttggtcgtgtttcagtacgaaggcttggccgtctactcccagaagttccttgggtatca
attccattcatggaaagaggagccagagccactactctgcagaaatgttgccaaagagtg
aaatgttttgtcgatttggatgctggttttgtcccaacaccctcaaagactgatcttgcc
agccaaaacctattctctgtggctctgaaaaactttggtagtaaatctaaggagaaggat
aacggtcagttacaaaaaaaaaaatatatatatatatatattagtctagtgactagagta
gagttaactctttgttctacagatgttagtatggtgattcatagagaaggaaaaagtttg
gcgtatgggcaagtggagaagggttatgaggaatgggttcttaagatgcataagtcatat
gatgaagaagacgcactgggtgaagatgaagcaaccgttatttttgattctttggataag
aaagctctttgcatatctcctgattgtgaagctgtgagggtgcacaaggtaatgaagcga
aaaagtaagtcatgggaacgtggacagaagatcaagattatgaaaggagcatgtgcagga
gttcacaagaacgatgtctatgcaaccattgactacttccttatagaaaactttgaagat
gagacgggaggtgatgctcggattatatgcaggcaaatcaatttctctgaggaagaagga
tgcatgctttcaaccattaaaggaatctcaaaactggaaattcgaaaatcttcatctttc
ccaattagtattatagacactgaaaagtgtgtactgattgatgataatgaatggaacaga
aaacttgtcaagcaaaaagaaaaggatccatcaagaattgatttgctggatgagaaagac
tgcagaacattgaaatttaatggggaaacaactattggtgcatcagtgtgtgctggacaa
accccaccacaacagattgttgcagttgttagacctgctagctacacatcttcaaagatg
tctaaaaagttggaccagaaacatattgttaaggtggatggtgagatgctcatggaagta
gaactacaaggcacagaaatgaaatcaagggtgaagaacgcaaaacctttgtattcggat
cgatgttttcctacaaaccgtggagggttgcatggtctttacatctttcaacttgagtcc
aagatcccacacttgttcaagaaagctggcacttacattttcagtttctctgttggtaat
tcagttacttgtaaaaagaaggtgattgttaaaccatcttctaaggtgggaagttggaag
cttggtggtaatcaagagaccattaatgttagggtgggatcgtctcttccacctttatct
atctactgtttggatgagtatgagaatcagataccattcacttctgttccaagtctggaa
gttagactgaaagccagaccagaatttgaagtcccggtttacaagactgaggccaaccta
gatcgtggaattctcaaactcaagaatatggtcgttgagactgatgcgttagatgacatc
agaccagattatgaagccaccttagaaatatgctcaaaggatgaactattttccgtctct
gttgcttgtatagttaaaccagggcctttgaagtgtgttgtcgaaaacgatacacaggct
ttagaatgcttgcttccggattctactgttgaaaacttcatcttggagatgttcgatgaa
tataataaccatgttgcagaaggtaccaatgttccgatttgtactagtggcttttttatc
caagacaggatgtgcttagacttaaaggttgatagtgatggctgcattgatctgtctggg
attctcaaagtcacagcaggctatggcaaacccgtatcactctctataatgtctggcaat
aaagagatcttcaagaaagagtctctagttgagataagagagctcaggctgttaacagag
ctcccggagtactgtactgctggtacaaatcttacaaacctcaagtttaaagtgacggat
tcatatggtattatggatactagtatcaacaatgacgataaatccgagtgtttccacacc
ttgagcattgaatccgattcaagcagcgttgatagtacaaccagatatgcctttgttcat
ggctcctgcaaaatcacttctctttccttacctgagactgagggtgccttctctttcaag
gttttccattctaggcatcctgagcttcatatgaacctaaagattcagctaactcctgct
caaacatttgaaagagatgagattggttgttctgaacctaatccaaggatatatctaaca
cctcaatcaaagatgggttcaactacaaatccatttgtggttccaactcaacagactcca
tcctcagagtttctaactcaacagactccaccttcacagtttagagttttgtccattaga
gaaatgtcatcggctatcagtagccaaactgccccagtggatatggcacagttcagtgag
tacactgagatactaaaagcaaagctcaatagttacactgaaaggatatctgaagcaaat
gagtgtcttaaatgtttggaggctgaacaagaagagtctgtgcaagagttgagtgccttg
caagcttctctggaacctcacggggtgtcattcccagagtgcctatccaacaaagaatcg
atgatgaaacacatagaagagaatcatcataacaaagcagcatcagtgttctgttctttg
tacagaaatgcaccggcttcaaagtctatgcttctgtcaaaggaaggtgtgctcggcatc
gtagcgcttcttggttcagttgcctcaacccctctaagcagggtattgtctgagtatttg
ggagacgatactatgctagctttggtatgcaaatcaacacgaccgggaccgaacattgat
cccatgcttcaagccgaagcagctaggcttgaaagatcaattaccagtcggtttcatgtt
ctatgccttggtgcaactagtccctggactggtggacttgtggagaatgatcctcagagg
aaactagccatggatgatccaaaacttcccgatggagatcctataccgggcttcataggc
tacgcagtgaacatgatcaacctggctgaagaagaactaaacaataaaacatataaaggt
cacgggcttagggaaacgctgttctatggtctgtttgggaagttacaggtttatgagacc
caaacacaggttgaagaggctcttctacacatcagtggtgatggtgcagtatcgttagat
ggatttatagcaaaaggaaacgagtttatatgttccgggtgcagtaaaccggagattcat
ttcccgataacagtaagggaaaacgaagaagagaagtggagcaacttggaagaagcaaga
aacagagtgagaagggttgaaaagaagttagtggcggcgaggtgcttgttgagtaagttg
gagaagaaaatgaacaaggctaatgaaagatatgacagtgcaacaaagctttctctagaa
agctaa
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