Brassica napus (rape): 106365705
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Entry
106365705 CDS
T04128
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106365705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106365705
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106365705
Complex C
U5 SnRNP specific factors
106365705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
EF-G_D2
Roc
Septin
SRPRB
Ras
Motif
Other DBs
NCBI-GeneID:
106365705
NCBI-ProteinID:
XP_048621568
LinkDB
All DBs
Position
C8:1885725..1890309
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AA seq
987 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESDDEIEDEEFQDKHPEEDVSDGEHPPGGSNGWITTIND
VEMDNQIVLPEDKKYYPTAEEVYGEDVETLVMDEDEQPLEMPIIKPVRDVRFEVGVKDST
TYVSTQFLVGLMSNPALVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTD
TRVDEQERNISIKAVPMSLVLEDSRSKSYLCNVIDTPGHVNFSDEMTASLRLSDGAVLIV
DAAEGVMVNTERAIRHAIQDHLPIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHI
SAASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFAKLYSKLHGVDMDVDKFASKLWGD
VYYHPDTRAFKRNPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLSNS
AYKLNVRPLLRLACSSVFGSSSGFTDMLVKQIPSPKEAAARKVDHAYTGPKDSAIYEAMV
ECDPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGTLRTGQSVRVLGEGYSPEDEEDMTVKE
VTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNENYDEDVFIFRALQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVS
IDWNRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLMMAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAWIAPEPLHRGSGQMIPTARRVAYSSFLMATPR
LMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCVSVFDHWAIVPGDPLDKSILLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSGNKFFDEAMMVELAQQTGDLHLQMM
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagcttgtatgatgagttcggcaactacattggacctgagatcgagtctgac
agagagagtgatgacgaaatagaagacgaggagtttcaagataagcaccccgaagaggat
gtatcagatggagaacatccccctgggggttctaacggctggatcaccacgatcaacgac
gtggagatggacaaccagattgttctccccgaggataaaaagtactatcccaccgcggag
gaagtttacggggaggacgttgagacgttagtcatggacgaggacgagcagcctctcgag
atgccgattatcaaacctgtcagagacgtcagattcgaggtgggcgtgaaggattctact
acctacgtgtcgacgcagtttctcgtcggcctcatgtctaatccggcgcttgtgaggaat
gttgctctcgtggggcatctgcagcatgggaagactgtgttcatggatatgttggttgag
cagacgcaccatatgtctacttttaatgctaaaaacgagaagcacatgaagtatacagac
acgagagttgatgagcaggagaggaacatttcgatcaaggcggttccgatgtcgcttgtc
cttgaggatagcaggtctaaatcgtatctgtgcaatgttatagataccccgggtcatgtg
aatttctctgatgagatgactgcttctctaagactctctgatggtgctgttctaattgtt
gacgctgctgaaggagtgatggtgaacactgagagggctataagacatgcaatccaagat
catcttcctattgtcgttgtgatcaacaaggttgacaggctcataaccgagctcaaactg
cctccaagggatgcttattacaagctgaggcatacaattgaagtcattaataaccacata
tctgctgcttcgacgactgctgggaacttacccctcatagaccctgcagctgggaatgtt
tgctttgccagtggtactgccggatggtccttcacgctgcagtcttttgctaaactgtat
tcgaagcttcatggggtggacatggacgtggataagtttgcatctaagctttggggagat
gtgtattatcaccctgatactagggcgttcaagagaaatcctccagtaggtggtggagaa
agagcatttgttcagtttattctggagcctctttacaagatatacagccaagtgataggt
gaacacaagaagagtgtagagaccacccttgcagaactaggagtgaccctgagtaatagt
gcatataagctgaacgtcagacctctgcttaggttagcctgtagctcagtctttggttcg
tcatcaggcttcactgatatgttggtaaagcaaattccttctcccaaagaggctgcagct
agaaaagtggaccacgcctacactggacccaaagattctgccatttatgaagcaatggta
gaatgtgatccgtctggacctctcatggttaatgtgacaaagctgtaccccaaatcagat
acgagcgtgtttgatgtatttggaagagtttacagcggtacgcttcggacagggcaaagc
gtacgtgtactaggagaagggtattcacctgaagatgaagaggacatgactgtaaaagaa
gtgaccaagctgtggatatatcaagctaggtacagaatacctgtaagcagcgcccctccc
ggttcgtgggttcttattgaaggcgttgatgcgtccatcatgaagactgcaaccctctgc
aatgagaactacgacgaagatgtcttcatattccgggctctccaatttaatacccttccg
gttgtcaagactgctactgagcctttgaatcctagtgagctgcctaaaatggtggaaggg
cttaggaagattagcaaaagctatccccttgctattaccaaagttgaggagtctggtgaa
catactattctaggcacaggggagttgtacttggattctatcatgaaggatctcagggag
ctctattcagaggtcgaagtaaaggtcgcagatccggttgtctccttctgtgagacagtg
gttgaatcttcgtcgatgaagtgttttgctgagacaccgaacaaaaagaacaaaataact
atgatcgcagagccattggatagaggactcgcagaggacattgagaatggtgtcgtaagc
attgactggaacaggaaacaacttggggacttcttcaagacgaaatatgactgggatcta
cttgcagcgcgttccatttgggcgtttggccctgacaaacagggtccaaatattttgctg
gatgacacactcccaactgaggttgacaagaacttgatgatggcagtgaaagactccatt
gttcaagggttccagtggggggcgcgagaaggaccactgtgtgatgagcccatcaggaat
gtcaagttcaagattgtagatgcctggatagcaccagagccgttgcaccgaggatctggt
cagatgattccaacagcacgtcgtgttgcttactcctccttcctcatggcgactccgagg
ctaatggaacctgtttactatgtggagatacaaacaccaatagactgtgtaactgccatc
tacacggttctgtcacgaagacgaggtcatgtgacatcggatgttcctcagcccggtact
ccggcgtatatcgtgaaggctttcttgccagtgatagagtcattcgggtttgagacggat
ctcagataccacacacagggacaagccttctgcgtatcagtctttgaccactgggccata
gttccaggagatcctctcgacaaatccatcctattgcgcccacttgagccagcccccatc
cagcacctagctcgcgagttcatggttaagacccgccgtagaaagggaatgagcgaggac
gtgagcgggaacaagttcttcgacgaggcaatgatggtggagctagcgcagcagacgggt
gatctgcatctgcagatgatgtga
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