Brassica napus (rape): 106371506
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Entry
106371506 CDS
T04128
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bna
Brassica napus (rape)
Pathway
bna03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106371506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106371506
Enzymes [BR:
bna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106371506
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106371506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
106371506
NCBI-ProteinID:
XP_013667043
LinkDB
All DBs
Position
A10:complement(11069319..11076008)
Genome browser
AA seq
1205 aa
AA seq
DB search
MTEEIKLSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFSAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLSVKELNDLLDRLASSENRGGKTSVLSTLIQKTNAQEMKWVIRIILKDLKLGMSER
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSDLIVQNIMADKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKER
HELLRKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHSAADVERFFKETVENRDEGV
VLKDLGSKWEPGDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLADR
AEANVYPRRFMSFCRVGTGLSDEELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESESTQDNPKVTKTSKRGGEKKNVPLVPSQFIQTDVSDIKGKTSIFSNM
IFYFVNLPRSHSLDKFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHF
SWVLDCCSRNNLLPLQPKYFLHLTDASRTKLQDEIDEFSDSYFFDLDLEGLKQVLSNAKQ
SEDSKSIEYYKKKLCPEKRWSCFIGCCIYFHLYSETLSNEEEALLGIMAKRLALEVLMGG
GKVSNNLAHASHLVVLSTAEDSLDFTSVSKSFSEKEKRLLLKRRLHVVSSNWLEDSLQRE
QKVCEEVYTLRPKSMEESDTEESDKSEHDTTEVASGGRAQTEEPASSKLATTSSRGRSST
RAGNKRGRSSANPVKRVQRRRGKQPSKIGGSETEESDAASEEKASTRLSDDISEETGDTQ
RNSRRGRSAKRGKSRVAQPQRVQRSRRGKKPLKIGGDDSEENDDKKDGSADEENKEETRE
PDVAKHRESLQRDDTVAVEEASSQDSRNAKTEMDREEKIQIHEDPLQAMLMNMIPSLSLR
NTSRTTGEASTANVCGEGESSEKRKLGAETDNACVKNAEADEVPPPVKKKKVSYRDVAGE
LLKDW
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaactcagcgtactagtgtctctcttcaactggattcagaagagc
aaaacctcatcccagaaacgctccaagttccgcaagttcctcgacacctactgcaaaccc
tccgattacttctccgccgtgcgtctcatcatcccgtcgctcgaccgagagcgaggcagc
tacggcctcaaggagtctgtgctcgccacgtgtctcatcgacgccctcggaatctctcgc
gatgctcccgacgctgttcgccttctcaattggcgtaaaggaggaaccgctaaggctgga
gccaacgccggaaacttctctttgattgctgctgaggtgctgcaacgtaggcaagggatg
gcgtctggtgggttgagtgttaaggagttgaatgatttgcttgatcgtttggcttcgagt
gagaacagaggggggaagacttctgttctttctacgctgattcagaagacgaatgcacag
gagatgaagtgggtcattaggatcattcttaaagacttgaagctggggatgagcgagagg
agtatatttcaggagttccatccagatgctgaggacttgtttaatgtcacttgtgacttg
aaactagtctgtgaaaagctcagggatcgccaccaacgtcacaagcgccaggatatagaa
gttggaaaagccgtacgaccccagttagctatgcgtatcagtgacgtaaatgctgcttgg
aagaagctccacgggaaagatgtagttgctgagtgcaaatttgatggggatcgcatacag
atacacaaaaatgggactgaaatacattacttctctaggaacttccttgatcattctgaa
tatgcacatgccatgtcggatcttatcgtacaaaatataatggctgacaagtgtatcctt
gatggtgaaatgttggtttgggatacgtcacttaatcggtttgctgaatttggttcgaat
caggaaatagccaaagcagcaagggagggtctcgacagccatagacagttatgttatgtt
gcctttgatgtgctctatgttggcgatactagcgtcatccaccagagtttaaaagaacgg
catgaactcctgagaaaagtggttaagcctttaaaaggccggcttgaagttctagtgccc
gaaggtggtctcaatgttcatcgcccttctggagaaccaagttggtctattgtggttcat
tccgcagctgatgttgagcggtttttcaaagaaacagttgaaaatagagatgaaggagtt
gtgcttaaagacctgggatcgaaatgggaacctggagatcgtagtggaaagtggttgaag
ttgaagcctgaatatgtccgggctggttctgatctagatgttcttataataggaggatac
tatggctctggccgtcacggaggagaggtagcacagtttctcgttgggttggctgaccgg
gcagaggcaaatgtatatcccaggcgatttatgtcgttttgtagagttggcacaggactt
tctgatgaagagcttaacactgttgtaagcaaactgaagccttatttcagaaaaaacgaa
cacccaaagaaggctccaccaagcttttatcaggtcacaaatcactcaaaagagagacct
gatgtttggattgaaagcccggaaaaatcaataatactctccatcactagtgacatcagg
acaataaggtctgaggtttttgtcgcaccttacagcctcaggtttcctcgtattgataaa
gtaagatacgacaaaccttggcatgaatgtctcgatgtgcaagcttttgtggaattggtg
aactcaagtaacggcaccacacagaaacagaaggaatccgaaagcacgcaggacaatccg
aaagtcactaaaacctccaagagaggaggagagaaaaagaatgtgcctcttgtcccatct
cagtttattcaaactgatgtatcggatatcaagggcaagacctcaatcttctccaatatg
atattttattttgtaaacctgcctcggtcccattctcttgataaattccacaaaatggtg
gttgagaatggagggaagttctcgatgaacttgaacaattcagtgactcattgcattgca
gcggaaagcagtggaataaagtatcaggcagcaaaacgtcaaagagatgtcatccacttt
tcttgggtcttagattgttgttcacggaataatcttcttccgttgcagccaaagtacttc
ctccacctcactgatgcttcaaggaccaaattacaggatgaaattgacgagttttccgat
tcttatttctttgatttagaccttgaaggtctcaaacaggtcttaagcaatgccaagcaa
tcggaagactcaaaatccattgaatactacaagaaaaagctatgtccggagaaaagatgg
tcctgcttcatcggttgctgcatttactttcacctctatagtgaaacattgagcaatgaa
gaggaagccctgttgggaatcatggctaagagattagcgcttgaagtcttaatgggtggt
ggtaaagtcagcaataatcttgctcatgcgtctcaccttgtagtcctttctacagcagaa
gactctttggattttacttcagtttcaaaaagtttcagcgaaaaggagaaacgtcttttg
ctgaagagaaggctacatgttgttagctcgaactggttagaagacagcttgcaaagagag
caaaaagtatgcgaggaggtgtacactctgaggcctaagagtatggaagagtctgatact
gaagaatcagataaatctgaacatgatacaacggaagtagcttctggtggtagggctcaa
actgaagagccagcttcctctaaattggcaactacgagttcaagaggacggtcaagtact
cgagctggtaataaaaggggaaggtcttctgcaaacccggtgaaacgagtacagagacgc
agagggaaacagccttctaagataggcggaagtgaaacagaggagagtgatgcggcttcg
gaagaaaaggcttcaacaagactcagtgatgatatatcagaagagactggtgatactcaa
agaaactctaggagaggaagatctgcaaagagagggaagtctcgtgtggcacaaccccaa
agagtacagagatcaagaagaggcaagaagcctttgaagataggaggagatgactctgag
gaaaatgatgacaagaaagatggttctgccgacgaggaaaacaaggaagaaacccgagag
cctgatgtagcaaagcacagagagtcactgcaaagagatgacacagtagcagttgaagag
gcctcctcacaagattctagaaatgcaaagaccgagatggatagggaagagaagatacaa
atccatgaggatccattacaagctatgttgatgaacatgatcccaagcctcagtctgaga
aacacaagccgaactacgggcgaagctagtacggctaatgtttgtggtgagggtgagtct
tcagagaaaagaaaacttggcgccgagactgataatgcttgtgtgaagaacgcagaggca
gatgaagttcctccgcctgtgaagaaaaagaaagttagctaccgcgatgttgcaggagaa
ctgctcaaagactggtga
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