Brassica napus (rape): 106400558
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Entry
106400558 CDS
T04128
Name
(RefSeq) ATP-dependent helicase rhp16
KO
K15083
DNA repair protein RAD16
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106400558
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
106400558
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
zf-C3HC4_2
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4
Prok-RING_4
zf-RING_2
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
106400558
NCBI-ProteinID:
XP_048613726
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Position
C5:complement(1784836..1788878)
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AA seq
704 aa
AA seq
DB search
MKIQAGKKAIHPFNEVDNVEEDGDDESSSDGKRLWEIREKEDQKWIDEHETEDGDLDHLN
NVITETAEPPPDLIIPLLRYQKEFLAWATKQEQSAVRGGILADEMGMGKTIQAISLVLAR
REAARALFRETMGLTLVICPLVAVSQWSDEIERCTSPGSAKVLVYHGAKKVKNAEEFKKY
DFVLTTYSTLESGYRGCIVSSKTEQTLEEDQIGKVVREKPIFHSIRWNRIILDEAHNIKE
RRSKTARAVFALEAKYRWALSGTPFQNNIGELYSLVRFLQIRPYSYYLCKDCDCELLDFP
TNSRCQCSDNAWRHFCWWNKNFVNMIKGNAERIKRAMIFLKHKILKDILIRRTKLGRSAD
LALPPRIITLRRDALDIKEFDYYESLYKQSQAQFNTYVEAGTLMTNYAHIFDLLTRLRQA
VDHPYLVVYSQASGANANLNDENKKESECGLCHEPAEDSVVTSCAHVFCKACLIDFSASL
GKVSCPTCSKLLTMDLTTNADTEQQAESKTTLKGLRASSIMNQLKLDDFQTSTKIEALRE
EIRLMVERDRSAKAIVFSQFTSFLELIDYTLGKCGVSCVQLVGTMSKAARDVAINKFRED
PDCKVFLMSMKVGVVALNLTVASHVFIMEPWWNPAVERQAQDRIHRIGQYKPIRVMKFII
ENTVEERILKLQKKKELLFETAVDGSQRGIGKWTSEDYKFLFTT
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaagatacaagccggcaagaaggcgattcatcctttcaacgaagttgacaacgttgag
gaagacggggatgacgaatcttcttcagatggcaagcggttgtgggagatccgggaaaaa
gaagatcagaaatggatcgatgaacatgagacagaggatggagatttggatcatctgaat
aatgtgattactgaaactgccgagccgcctcctgatttgattattccgctgttaaggtac
caaaaggagtttttagcatgggcaacaaaacaggaacaatcagctgtaagaggaggcatt
ctcgcagacgagatggggatgggaaaaaccatacaagccatctctcttgttcttgccaga
cgtgaagctgccagggctctgtttagagaaacaatggggctcacccttgtaatttgtcct
cttgttgctgtttctcagtggtcagatgagattgagcggtgtacatccccgggaagcgcc
aaggtccttgtataccatggggctaagaaagtgaagaatgctgaagagttcaagaagtac
gactttgtattgacaacatattctacgcttgagagtggatacaggggatgcatcgtgtcg
tccaagactgaacaaacattagaggaagatcagattggtaaagtggtcagagagaagcct
atttttcactctattaggtggaatcggatcattttggatgaggctcataacatcaaagaa
agacgtagcaaaactgcgagagctgtttttgctttggaggctaagtacagatgggctttg
agcggtacccctttccagaataatattggagagctttattctctggttcgctttctgcaa
attcgtccatactcgtattacctttgcaaggactgtgactgtgaacttcttgatttccct
acgaattcaaggtgtcagtgctctgataacgcatggcgacatttttgttggtggaacaag
aactttgtgaatatgatcaagggaaacgcggaacgaataaagcgagccatgatatttctt
aagcacaaaattctgaaagacatcctcataagacgtactaaattgggccggtcagctgat
cttgcccttcctcctagaatcatcactctgaggcgggatgcactagatataaaagagttt
gattactatgaatcactatacaaacagagtcaagcgcaatttaatacgtatgttgaggct
gggacattgatgactaactatgcacatatatttgatcttcttacccgtcttagacaggct
gttgatcatccataccttgtggtgtattcacaagctagtggtgccaatgctaacttgaat
gatgagaacaaaaaggagagcgaatgcggtctctgccacgaaccggctgaggacagcgtt
gtgacttcttgtgcgcatgtgttctgtaaagcttgtttgattgatttctctgcatccctg
ggaaaagtcagctgcccgacatgctcgaaactactgactatggatttgactaccaacgct
gacacagagcaacaggcggaaagcaagacaacacttaaaggattgagagcctcaagcatt
atgaatcagttaaagctcgatgatttccaaacaagtacaaagatagaggctttgagggaa
gaaatcaggctcatggttgaaagagataggtctgccaaagcaattgttttcagccaattc
acatcatttttggaactgatagactacaccctcgggaagtgtggggttagttgcgttcaa
ctggtgggaacaatgtccaaggcagctagagatgttgccatcaataaattcagagaagat
ccagattgcaaagttttcttgatgagtatgaaagttggagtggttgctctcaacctaaca
gttgcctcgcatgtgttcattatggaaccgtggtggaacccagcggttgagaggcaagca
caagacagaatacataggatcggacagtacaagccaatcagggttatgaaattcataata
gagaacacagtggaggaaaggattctgaagcttcaaaagaagaaggaacttttgtttgaa
acggccgttgatggttctcagcggggcataggaaagtggacatctgaagattataagttt
ctgtttaccacctaa
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