Brassica napus (rape): 106418524
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Entry
106418524 CDS
T04128
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bna
Brassica napus (rape)
Pathway
bna03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106418524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106418524
Enzymes [BR:
bna01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106418524
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106418524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
106418524
NCBI-ProteinID:
XP_013714703
LinkDB
All DBs
Position
C9:complement(48268535..48275401)
Genome browser
AA seq
1203 aa
AA seq
DB search
MTEEIKLSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFAAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLSVKELNDLLDRLASSENRGEKTSVLSTLIQKTNAQEMKWVIRIILKDLKLGMSER
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSDLIVQNIMADRCIL
DGEMLVWDTSLNRFAEFGSNQEIVKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLTER
HGLLRKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHSAADVERFFKETVENRDEGV
VLKDLGSKWEPGDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLADR
AETNVYPRRFMSFCRVGTGLSDEELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESESMQDNPKVIKSSKRGGEKKNASLVPSQFIQTDVSDIKGKTSIFSNM
IFYFVNLPRSHSLDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHF
SWVLDCCSRNILLPLQPKYFLHLTDASRTKLQDEIDEFSDSYFFDLDLEGLKQVLSNAKQ
SEDSKSIEYYKKKLCPEKRWSCFIGCCIYFHLYCETLSIEEEALLGIMAKRLALEVLMGG
GKVSHNLSHASHLVVLSTAEETLDFTSVSKSFSEKEKRLLLKRRLHVVNSNWLEDSLQRE
QKLSEDVYTLRPKSMEESDTEESDKSEHDTTEVASGVSAQTEEPASSKMAVTSSRGRSST
RAGNKRGRSSTNSVKRVQRRRGKQPSKIGGSETEESDTASEEKASTRLSDDIAEETGDTQ
RNSRRGRSAKRGKSRVAQPQRVQRSRRGNKPLKIGGDESEENDDFDDKKNDSAEEENKEE
TGEPDKAKQRDNTVTVEEASSKDSRNAKTEIDREEKIQIHEDPLQAMLMNMIPSLSLRNT
SRTTGDASTANVCGESESSERRKLGAETDNTCVMNAEAGEVPPPVKKKKVSYRDVAGELL
KDW
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaattaagcgtactagtgtctctgttcaactggattcagaagagc
aaaacctcatcccagaaacgctccaagttccgcaagttcctcgacacctactgcaaaccc
tccgattacttcgccgccgtccgtctcatcatcccgtcgctcgaccgagagcgaggcagc
tacggtctcaaggagtctgtgctcgccacgtgtctcatcgacgccctcggaatctctcgc
gatgctcccgacgcggttcgccttctcaattggcgcaaaggaggaaccgctaaggctgga
gccaacgccggaaacttctctttgattgctgctgaggtactgcaacgtaggcaagggatg
gcgtcgggtgggttgagtgttaaggagttgaatgatttgcttgatcgtttggcttcgagt
gagaacagaggggagaagacttctgttctttctacgctgattcagaagacgaatgcacag
gagatgaagtgggtcattaggatcattcttaaagatttgaagctggggatgagcgagagg
agcatatttcaggagttccatccagatgctgaggacttgtttaatgtcacttgtgacttg
aaactagtctgtgaaaagctcagggatcgccaccaacgtcacaagcgccaggatatagaa
gttggaaaagctgtacgaccccagttagctatgcgtatcagtgacgtgaatgctgcttgg
aagaagctccacgggaaagatgtagttgctgagtgcaaatttgatggggatcgcattcag
atacacaaaaatgggactgagatacattacttctctaggaacttccttgaccattctgaa
tatgcacatgccatgtcggatcttatcgtacaaaatataatggctgacaggtgtatcctt
gatggtgaaatgttggtttgggatacatctcttaatcggtttgctgaatttggttcgaat
caggaaatagtcaaagcagcaagggagggtctcgacagccatagacagttatgttatgtt
gcctttgatgttctttatgttggcgatactagtgtcatccaccagagtttaacagaacgg
cacggactcctgaggaaagtggtgaagccgttaaaaggccggcttgaagttttagtgcct
gaaggtggtctcaatgttcatcgcccttcaggggaaccaagttggtctattgtggttcat
tctgcagctgatgttgagcggtttttcaaagaaacagttgaaaatagggatgaaggagtt
gtgcttaaagacctgggatcgaaatgggaacctggagatcgcagtggcaagtggttgaag
ttgaagcctgaatatgtccgggctggttctgatctagatgttcttataataggaggatac
tatggctctggccgtcacggaggagaggtagcacagtttctcgttgggttggctgaccgg
gcagagacaaatgtgtatcccaggcgatttatgtcgttttgtagagttggcacaggactt
tctgatgaagagcttaacactgttgtaagcaaactgaagccttatttcagaaaaaatgaa
cacccaaagaaggccccaccaagcttttatcaggtcacaaatcactcaaaagagagacct
gatgtttggattgaaagcccggaaaaatcaataatactctccatcactagtgacatcagg
acaataaggtctgaggtttttgtcgcaccttacagcctgaggtttcctcgtattgataaa
gtaagatacgacaaaccttggcatgaatgtctcgatgtgcaagcttttgtggaattggtg
aactcaagtaacggcaccacacagaaacagaaggaatccgaaagcatgcaggacaatccg
aaagtcattaaatcgtccaagagaggaggagagaaaaagaatgcgtcacttgtcccatct
cagtttattcaaactgatgtatcggatatcaagggcaagacctcaatcttctccaatatg
atattttattttgtaaacctgcctcggtcccattctcttgatacattccacaaaatggtg
gttgagaatggagggaagttctcgatgaacttaaacaattcagtgactcattgcattgca
gcggaaagcagtggaataaagtatcaggcagcaaaacgtcaaagagatgtcatccacttt
tcatgggtcttagattgttgttcacggaatattctgcttcctttgcagccaaagtacttc
ctccatctcactgatgcttcaaggaccaaattacaggatgaaattgacgagttttccgat
tcttatttctttgatttagaccttgaaggtctcaaacaggtcttgagcaatgccaagcaa
tcggaagactcaaaatccattgaatactacaagaaaaagctatgtccggagaaaagatgg
tcctgcttcatcggttgctgcatttactttcacctctattgtgaaacattgagtattgaa
gaggaagctctgttgggaatcatggctaagagattagcgcttgaagtcttaatgggtggt
ggtaaagttagccataatctttctcatgcctcgcaccttgtagtcctttctacagcagaa
gagactttggattttacttcagtttcaaaaagtttcagcgaaaaggagaaacgtcttttg
ctgaagagaaggctacatgttgttaactcgaactggttagaggacagtttgcaaagagag
caaaaactaagcgaggatgtgtacactctgaggcctaagagtatggaagagtcggatact
gaagaatcagataaatctgaacatgatacaacggaagtagcttccggtgttagtgctcaa
accgaagagccagcttcctcgaaaatggcagttacgagttcaagaggacggtcgagtact
cgagctggtaataaaaggggaaggtcttctacaaactcagtgaaacgagtacagagacgc
agagggaaacagccttctaagataggcggaagtgaaacagaggagagtgatacggcttcg
gaagagaaggcttcaacaagactcagtgatgatatagcagaagagactggtgatactcaa
agaaactctaggagaggaagatctgcaaagagaggaaagtctcgtgtggcacaaccccaa
agagtacagagatcaagaagaggcaacaagcctttgaagataggaggagatgagtctgag
gaaaatgatgattttgatgacaagaaaaatgattccgcggaggaggaaaacaaggaagaa
acaggagagcctgacaaagcaaagcaaagagataacacagtaacagttgaagaggcctcc
tcaaaagattctagaaatgcaaagaccgagatagatagggaagagaagatacaaatccat
gaggatccattacaagcaatgttgatgaacatgatcccaagcctcagtctgagaaacaca
agccgaactacgggcgacgctagtacggctaatgtttgtggtgagagtgagtcttcagag
agaagaaaacttggcgccgagactgataatacgtgtgtgatgaacgcagaggcaggtgaa
gttcctcctcctgtgaagaaaaagaaagttagctaccgcgatgttgcaggagaactgctc
aaagactggtga
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