KEGG   Brassica napus (rape): 106420995
Entry
106420995         CDS       T04128                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
bna  Brassica napus (rape)
Pathway
bna03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106420995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bna03021]
    106420995
Enzymes [BR:bna01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     106420995
Transcription machinery [BR:bna03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     106420995
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 106420995
NCBI-ProteinID: XP_013717294
LinkDB
Position
C4:complement(27908408..27915518)
AA seq 1447 aa
MEEECEELQVPMGTLKSIRFSISNNKDRKNMAVMDVEAANQVTDSRLGLPNPDSICRSCG
SKDRKVCEGHFGVINLKYPVINPYFLKEIATLLNKICPGCKYMRKKQSQSTEDRPERCRY
CTSNTGYPLMKFRVTTKEVFRRSGIVCEVSDDNLFKLSKRGLSSLPPDYWEFLPKDSNID
ESCLKPSRRILTHAQVYALLCGIDERLIRKDIPMFDSLPLTSFPVTPNGHRVSEMVNQFT
GARLVFDERTRIYKKLVGFEGNGLELSARVIECMQYSRLFSENMSPSQESANPYQKKSDT
PKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPRRIAERLQVSENLNDWNRER
LVTSCFHKLLERGETHVRRGGSLVAIRVIDDLQTGDSILRTLKDGDTVLMNRPPSIHQHS
LIAMSVKVLPTTSVVSLNPICCLPFRGDFDGDCFHGYVPQSIQAKVELDELVALDKQLVN
RQNGRNLLSLGQDSLTAAYLVNVETNCFLNRAQMQQLQMYCPFELPPPAIIKASSSEPQW
TGMQIFGMLLPPGFEYTCPLNDVVVSNGELLSSSDGSAWLRDGEGNFIQGLLKEHKEKVL
DIMYSTQEMFSQELQMRGLSVSLTDLYLASDPESRRNLTEEISYGLQEAEQVCNKQQLMV
ESRRDFLAGNVEDLSADFDRFCYERQRSATLSKLAVSAFKDAYRDVQSLAYRYGDHSNSF
LIMSKAGSKGNIGKLAQHSMCVGLQNSSVALSFGFPRKLTCASWNDPNSPLRGAKREDQT
GHESFVPFGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADIPGALNRKLMFFMRDIYAA
YDGTVRNSFGNHLVQFRYETDDAEEDMAGEAVGSLSACALTEAAYSALDQPISLLETSPL
LNLKNVLECGSKKGLKEQTMSLYLSETLSKKKHGFEYGALDIKSHLEKLSFSEIVSTSMI
IFCPRTNTKMPMSSWVCHFHISKKVLKQKQLDVGSVVSSLNKQYANRKKELKLDVIDLEI
QSTNHCSWDDKSMEDDRFCITVTVLETSTHGSLELDAIRLVLIPFLLDSPVKGYLEIKKV
EILWVDRPKAPIRNKKHMGGELFVKVTMHGVRGKKNIWSALLETCLPIMDMIDWTRSHPD
NIRQCCSVYGIDAGRSIFLADLESAVSDTGKGMLREHLLLVADCLSVTGEFVALNPKGWS
KQRQAESTPAPFTQACFSSPSQCFLKAAKEGVTDELQGSIDALAWGKVPSFGTGDQFEII
ISPKDHGFSSTPVDVYEFLSSTATLPKRKASSLPKSDKFTLQPFPLLDTALSKAVKTLDG
KGLTRSQLRMIFTWDDIEKLSRSLKRILYNYEIDATLNERDERLLMMALLFHPNRDEKIG
PGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNFYKAKYLRNG
TVQAGTI
NT seq 4344 nt   +upstreamnt  +downstreamnt
atggaagaagaatgcgaggagcttcaggtgcccatggggactctaaagtccataaggttt
agcatttcgaataacaaagaccgaaaaaacatggctgtcatggatgttgaagctgcaaat
caggttactgattcccggttagggctccccaatccagattctatatgcagatcatgtggc
agcaaagatagaaaagtttgcgaagggcattttggggttattaacctcaagtacccagta
atcaacccttatttccttaaggagatagctacactattgaacaagatctgccctggatgt
aaatacatgcggaaaaaacagtctcagagtactgaagaccggcctgagagatgtagatat
tgcacttcaaatacaggttaccctctgatgaagtttcgggtaacgacgaaagaagtgttt
aggagatccggaattgtctgtgaagtgagtgacgacaatctgttcaaactcagtaaacgg
ggactatcatcactacctccagattattgggagtttctgcctaaagactctaacatcgac
gaaagctgtttgaaaccaagcaggcggattctaactcatgcacaggtttatgcattgttg
tgtgggattgatgagagactcatcaggaaggatattcccatgtttgactctcttcctctg
acatcttttccagttacgccaaacggtcatcgtgtatccgaaatggtcaatcagttcacc
ggggctcgactagtttttgatgaacggactcgtatctacaagaaactagttggctttgaa
ggaaatggtcttgagctgagtgctcgtgtgatcgaatgcatgcagtattcaagactcttt
tcagaaaacatgtcaccgagtcaagaatctgcaaacccttaccagaagaagtcagacact
cccaaactgtgcggtctaagattcatgaaagatgtgctgcttggtaaaagaagcgaccac
acgttcaggacagtagttgtgggcgacccttctctcaagcttaacgagatcggtatacct
cggaggatcgctgagaggcttcaagtatcagagaatctcaacgactggaacagagaacgc
ctcgtcacttcctgtttccacaagctcctcgagagaggagagactcacgtgagaagagga
ggtagcttagtagctatccgcgtcatcgacgatctccaaacaggagacagcattttgcgg
acgttgaaagatggagacactgtgttgatgaacagaccgccttcgattcatcagcactcg
cttatcgcaatgtctgtcaaagtcctccctactacttccgttgtctccctgaaccctatc
tgctgtttgccctttcgcggcgacttcgatggagattgttttcacgggtacgttccacag
tcgatccaagccaaggttgagctcgacgagcttgtggctttggacaagcagcttgttaac
agacagaatggtcgtaacttgctttcgttaggacaggacagcttgacagcggcttatctt
gttaacgtcgagacaaactgttttctgaaccgagctcagatgcagcagcttcagatgtac
tgtccctttgagcttcctccgcctgcgattatcaaagcttcgagtagtgagccgcaatgg
acggggatgcagatctttgggatgcttctgccgccagggtttgagtatacttgccctctg
aacgatgtggttgtaagcaacggagagcttttgtcttcctctgatgggtctgcttggtta
cgtgacggcgaaggaaacttcatccagggtttgctgaaggaacataaagagaaagtgctt
gacatcatgtactccactcaagaaatgttctctcaggagttgcagatgagaggactgagt
gtttctttaacggatctgtacttggcctctgatccggagtctcggagaaacttgacagag
gagattagttacggattgcaagaagctgaacaagtctgcaacaagcagcagcttatggtc
gagtcacgtagagacttcctcgcgggtaatgtagaagatttgtctgcagattttgaccgg
ttctgctacgagagacagagatcagcgaccttaagcaaacttgcggttagtgcattcaaa
gatgcttacagagacgtccaatctctggcgtataggtacggagaccactctaattcgttt
ctcatcatgtccaaagctggtagcaaagggaacatagggaagcttgctcagcacagtatg
tgcgttggtctacaaaactcttcagtcgcgttgtccttcgggttcccacggaagctgact
tgcgcctcatggaacgatccgaacagtccgcttcgcggggcaaagagagaagaccaaacc
ggtcatgagtcgtttgtcccgttcggtgtcattgagaactcgtttctaacgggtctgaat
ccgttggagtcttttgttcattcagtgacgagccgggacagctcattcagcggtaacgct
gatatcccgggggcgcttaacaggaaactgatgttctttatgagggacatatacgctgct
tacgacgggacggtgagaaactcattcgggaaccatttggttcagtttcgttatgagact
gatgatgcagaagaagacatggccggtgaagcagttggatcactttctgcttgtgctctc
accgaggctgcttacagcgcgcttgatcagcccattagccttcttgaaacttcgcctctt
ctgaatcttaagaatgtgttagagtgtgggtcgaagaaaggtctaaaagaacagacgatg
tctttgtatttgtctgaaacgctttctaagaaaaagcacgggttcgaatacggtgcactg
gacatcaagagccacttggagaagctcagtttctcagagattgtttcaacgtctatgata
atattctgtccgaggacaaacacaaagatgcctatgagctcgtgggtttgccattttcac
atctccaagaaagtactgaagcagaaacaactggatgtcggatctgttgtctcttcatta
aacaagcagtatgcaaacaggaagaaagagctgaagcttgatgtaattgatttagagata
caaagcacaaaccactgttcttgggatgataaatcaatggaagatgatagattctgcatc
acagttactgttcttgaaacctccacacacggttctttggaacttgatgctattcgactt
gtcttgatcccttttcttcttgactctcctgtcaaaggctacctagagattaaaaaggtg
gagatcttatgggttgacagaccaaaagcgccgataaggaacaagaaacatatggggggt
gagcttttcgtgaaggttacaatgcatggagttcgtggcaaaaagaacatctggagcgct
cttcttgaaacctgtcttcccattatggatatgatcgattggacaagaagccatcctgat
aatatccgacaatgctgctcggtttatggaatagacgctggacgtagcatcttcctagcg
gatttggagtctgctgtgtctgatactggtaaagggatgcttcgagaacatctgcttctt
gtagcggattgtctctccgttaccggggagtttgtggcattaaaccccaaaggttggagt
aaacaaagacaggctgagtccactcctgcaccttttactcaagcttgcttctcgagccca
agtcaatgctttctcaaagctgctaaggaaggtgttacagacgagcttcaaggatctatc
gacgcattagcttgggggaaagttccttctttcgggactggagatcagttcgaaatcatc
atctccccaaaggatcatgggtttagtagtacaccagtagacgtgtatgagtttctgagt
agtacagcaacgcttccaaagagaaaggcaagctccttgcccaaatcagacaagttcacg
ctccagccgttccccttgctcgatacagctctgtccaaggcagtgaagacactagatggg
aaaggactcacaaggtcgcagctcagaatgatctttacatgggacgacattgaaaagctt
tcccggtcactgaaacgtatcctctacaattacgagatcgatgctacgttgaatgagagg
gatgaaagacttttgatgatggctcttctctttcaccccaacagagatgagaagatagga
ccaggcttccaaggaatcaaggtggctaattctaagcatgggaatgctcgttgctttgag
gtggtgagaacagacggaacaacagaagatttctcttaccacaagtgtgtgttgggagca
acagagatcattgcacctaagagggtaaacttctacaaggccaagtaccttagaaacggt
acggtgcaggccggtactatctag

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