Brassica napus (rape): 106452657
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Entry
106452657 CDS
T04128
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
bna
Brassica napus (rape)
Pathway
bna04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
106452657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106452657
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
106452657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
106452657
NCBI-ProteinID:
XP_013750273
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All DBs
Position
A9:complement(12315311..12321642)
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AA seq
934 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEESGLGALDITRPNPNGFEFDNLYLDMNGIIHPCFHP
EGKPAPATYDDVFKSMFEYIDHLFTLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDA
AEAEAEEEMLRQDFEAGGQILSAKEKAETSDSNVITPGTPFMAVLSVALQYYIQSRLNRN
PGWRFVKVILSDSNVPGEGEHKIMSYIRLQRGLPGFDPNTRHCLYGLDADLIMLSLATHE
VHFSILREVITYPGQQEKCFVCGQTGHFAADCPGKSGSPDAASDIPIHKKKYQFLNIWVL
REYLQYELAIPDPPFTINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRK
EFTAMGGYLTDSGEVLLDRVEHFIQAVAANEDKIFQKRTRIKQSMENNEEMKQRSRRDPS
EIPPEPVEDKIKLGEPGYKERYYAEKFSTTNPEEIEQIKQDMVLKYVEGLCWVCRYYYQG
VCSWQWFYPYHYAPFASDLKNLSDLEITFFIGEPFKPFDQLMGTLPAASSNALPGEYRKL
MTDPSSPILKFYPSDFEIDMNGKRFSWQGIAKLPFIEEKLLLASTRKLEETLTVEERQRN
SVMLDLLYVHPTHPLGQRVMQYYHFYHQLPPNECLPWMIDPNTSQGMNGFLWFSERNGFQ
TRVVSPVNGFPCIEQNRALNVTYLNPAKHSHIPEPPRGAIIPDKILTPADIKPFPVLWHE
DNSNRRRQSRDRPQVAGAIAGHSLGEAAHRLIKNTLNMKSSAGSASGLIDPNSYNRNIPG
NYHYGGPRAAGSSSYRKSYGDDSSYYNYGKYNNSSQGMYSNGPRYPGPSPDYNRNYNNNS
KMVVKQPNHGGIRTGSSVEDNSRSKQLYSSYTEAANANINNPLPSPPTQWIGAPQGGNFS
GGYYREGGVGYGEMNGKKVIYQPKAQQSRPGFNE
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcgttctacagatggctcgccgaccgataccccaagtcaattagcgac
gtcgttgaggaagaatcgggtcttggtgccctagatatcaccagacctaaccctaacgga
ttcgaatttgataatttgtacctcgacatgaacggtatcatccatccctgtttccatcct
gaaggaaagcctgcacccgccacatacgatgatgtattcaaatcaatgttcgagtacatt
gaccatctatttactttagtgcgtcccaggaagcttctttatttggctatagatggagtt
gcaccaagagcaaagatgaatcagcagcgttctcggcgattcagagctgcaaaggacgct
gcagaggctgaagctgaggaagagatgttgagacaagattttgaggctggagggcaaatc
ttgtctgctaaagagaaggcagaaacctctgattcaaatgtcattactcctgggactccg
tttatggctgtactctcagtagctctgcagtattacatacaatctaggttaaatcgtaac
cctggttggagatttgttaaggtgattctctctgattcaaatgttccgggggaaggagaa
cacaagataatgtcatacattcgtctacaacgtggtcttcctggtttcgatccaaatacg
cggcattgtctatacggtctggatgcagatttgataatgctctctctagctacacatgaa
gttcacttttcaatcttaagagaggttatcacttaccctggccaacaagagaaatgtttt
gtgtgtggacaaactggtcattttgctgcagattgccctggaaaatcaggtagcccagat
gcagcatctgatattccaatccacaagaaaaaatatcagttcctgaacatctgggtgctg
cgagaatatctgcaatatgaattggccatcccagatcctcctttcaccatcaacttcgag
agaattatagatgactttgtattcctttgcttctttgttggcaatgatttcctgcctcat
atgcctactttagaaattcgagagggggctataaacttgctgatgcatgtttacagaaag
gaatttacagctatgggagggtatctaactgattctggtgaggttttactagatagggta
gagcatttcattcaagctgtcgcggcaaatgaagataaaatatttcagaaaaggacgcgg
ataaaacagtcaatggaaaacaatgaagaaatgaaacaaagatcaagaagagacccatct
gaaataccacctgaaccggtagaggataagattaagctgggagagcccggctacaaggag
aggtattatgctgagaaatttagtacgaccaatccagaggaaattgagcaaatcaaacaa
gacatggtactaaaatatgttgaaggtttgtgctgggtttgccggtactactaccaaggt
gtatgctcttggcaatggttttacccataccattatgccccatttgcttcagatcttaag
aatctatctgatttggaaatcacatttttcattggagagccctttaaaccttttgatcag
ttaatgggaaccctgccggctgcaagctcaaacgctctgcctggagaataccggaaattg
atgactgatccctcatctccgatcctgaaattttacccttctgattttgagattgacatg
aatggaaagcgcttctcttggcagggtattgcgaaacttcctttcattgaggagaagtta
ttgttagcatctacaaggaagcttgaagaaacgctaacggtggaagaacggcaacgcaac
agcgtgatgcttgatttgttatatgtacaccccactcatccactgggccagcgggttatg
cagtactaccacttttaccaccagttgccaccaaatgaatgtcttccatggatgattgac
ccgaatactagccaagggatgaacggttttctgtggtttagtgaaaggaacggtttccaa
actagagtcgtctcccctgtcaatggcttcccatgcattgagcagaaccgagccttaaat
gttacgtacttgaatcctgccaaacactctcatatcccagaaccaccaagaggagctatc
attccggacaagatcttgacgccggcagatataaagccatttcctgttttatggcacgaa
gacaatagcaaccgacgccgacaatcccgagatagaccacaagtggctggtgctatagcc
ggacattcactgggagaagcagcacatcgtctgatcaaaaacacccttaatatgaaatct
tccgctggttcggcttcaggattaattgacccaaactcatacaaccgaaatataccgggt
aattatcattacggtggaccaagagcagcgggttcctcttcttacaggaaatcatatggc
gatgactcgagctactacaattacggaaagtataacaatagctctcaaggaatgtacagt
aacggtccaagatatcctggtccatcaccagactataaccggaactacaacaacaactcc
aagatggtagtaaaacaaccgaaccatggtggaatcagaactggttcatcggtagaagat
aacagcagaagcaaacaattgtattcaagctatacagaagctgctaatgcaaatatcaac
aacccattgccatcaccgccaacacaatggattggtgcaccacaaggtgggaatttcagt
ggtggatactatagggaaggaggagttgggtatggtgagatgaatggaaagaaagtgatt
tatcagcctaaggcacagcaaagtcggccaggctttaatgaatga
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