Brassica napus (rape): 111215767
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Entry
111215767 CDS
T04128
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
bna
Brassica napus (rape)
Pathway
bna04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
111215767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
111215767
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111215767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
111215767
NCBI-ProteinID:
XP_022575558
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All DBs
Position
C9:complement(19192459..19198829)
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AA seq
934 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEESGLGALDITRPNPNGFEFDNLYLDMNGIIHPCFHP
EGKPAPATYDDVFKSVFEYIDHLFTLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDA
AEAEAEEEMLRQDFEIGGQILSAKEKAETSDSNVITPGTPFMAVLSVALQYYIQSRLNRN
PGWRFVKVILSDSNVPGEGEHKIMSYIRLQRGLPGFDPNTRHCLYGLDADLIMLSLATHE
VHFSILREVITYPGQQEKCFVCGQTGHFAADCPGKSGIPNAASDIPIHKKKYQFLNIWVL
REYLQYELAIPDPPFTINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRK
EFTAMGGYLTDSGEVLLDRVEHFIQAVTANEDKIFQKRTRIKQSMENNEEMKQRSRRDPS
EIPPEPIEDKIKLGEPGYKERYYAEKFSTTNPEEIEQIKQDMVLKYVEGLCWVCRYYYQG
VCSWQWFYPYHYAPFASDLKNLSDLEITFFIGEPFKPFDQLMGTLPAASSNALPGEYRKL
MTDPSSPILKFYPSDFEIDMNGKRFSWQGIAKLPFIEEKLLLASTRKLEETLTVEERQRN
SVMLDLLYVHPTHPLGQRVMQYYHFYHQLPPNECLPWMIDPNASQGMNGFLWFSERNGFQ
TRVVSPVNGFPCIEQNRALNVTYLNPAKHSHIPEPPRGAIIPDKILTPADIKPFPALWHE
DNSNRRRQARDRPQVAGAIAGHSLGEAAHRLIKNTLNMKSSTGSASGLIDPNSYNRNIPG
NYHYGGPRAAGSSSYRKSYGDDSSYYYSGKYNNSSQGMYSNGPRYPGPSPDYNRNYYNNS
KMVVKQPNHGGIRTGSSVEDNGRSKQLYSSYTEAANANINNPLPSPPTQWLGAPQGGNFS
GGYYREGGVGYGEMNGKKVIYQPKAQQSQPGFNE
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcgttctacagatggctcgccgaccgataccccaagtcaattagcgac
gtcgttgaggaagaatcgggtcttggtgccctagatatcaccagacctaaccctaacgga
ttcgaatttgataatttgtacctcgacatgaacggtatcatccatccctgtttccatcct
gaaggaaagcctgcacctgccacatacgatgatgtattcaaatcagtgttcgagtacatt
gaccatctatttactttagtgcgtcccaggaagcttctttacttggctatagatggagtt
gcaccaagagcaaagatgaatcagcagcgttctcggcgattcagagctgcaaaggacgca
gcagaggctgaagctgaggaagagatgttgagacaagattttgagattggggggcaaatc
ttgtctgctaaagagaaggcagaaacctctgattcaaatgtcattactcctgggaccccg
tttatggctgtactctcagtagctcttcagtattacatacagtctaggttaaatcgtaac
cctggttggagatttgttaaggtgattctctctgattcaaatgttccgggggaaggagaa
cacaagataatgtcatacattcgtctacaacgtggtcttcctggtttcgatccaaataca
cggcattgtctatacggtctggatgcagatttgataatgctctctctagccacacatgaa
gttcacttttcaatcttaagagaggttatcacttaccctggccaacaagagaaatgtttt
gtgtgtggacaaactggtcattttgctgcagattgccctggaaaatcaggtatcccaaat
gcagcatctgatattccaatccacaagaaaaaatatcagttcctgaacatctgggtgctg
cgagaatatctgcaatatgaattggccatcccagatcctcctttcaccatcaacttcgag
agaattattgatgactttgtattcctttgcttctttgttggcaatgatttcctgcctcat
atgcctacattagaaattcgagagggggctataaacttgctgatgcatgtttacagaaag
gaatttacagctatgggaggctatctaactgattctggtgaggttttgctagatagggta
gagcatttcattcaagctgtcacggcaaatgaagataaaatatttcagaaaaggacgcgg
ataaaacagtcaatggaaaacaatgaagaaatgaaacaaagatcaagaagagacccatct
gaaataccacctgaaccgatagaggataagattaagctgggagagcccggctacaaggag
aggtattatgctgagaaatttagtacgaccaatccagaggaaattgagcaaatcaaacaa
gacatggtactaaaatatgttgaaggtttgtgctgggtttgccggtactactaccaaggt
gtatgctcttggcaatggttttacccataccattatgccccatttgcttcagatcttaag
aatctatctgatttggaaatcacatttttcattggagagccctttaaaccttttgatcag
ttaatgggaaccctgccggctgcaagctcaaacgctttgcctggagaataccggaagttg
atgactgatccctcatctccgatcctgaaattttacccttctgattttgagattgacatg
aatggaaagcgcttctcttggcagggtattgcgaaacttcctttcattgaggagaagtta
ttgttagcatctacaaggaagcttgaagaaacgctaacggtggaagaacggcaacgcaac
agcgtgatgcttgatttgttatacgtacaccccactcatccactgggccagcgggttatg
cagtactaccacttctaccaccagttgcctccaaatgaatgtcttccatggatgattgac
ccgaatgctagccaagggatgaacggttttctgtggtttagtgaaaggaacggttttcaa
actagagttgtttcccctgtcaatggcttcccatgcattgagcagaaccgagccttaaat
gttacatacttgaatcctgccaaacactctcatatcccagaaccaccaagaggagctatc
attccggacaagatcttgacgccagcagatataaagccatttcctgctttatggcacgaa
gacaatagcaaccgacgccgacaagcccgagatagaccacaagtggctggtgctatagcc
gggcattcactgggagaagcagctcatcgtctgatcaaaaacacccttaatatgaaatct
tccactggttcggcttcaggattaattgacccgaactcatacaaccgaaatataccgggt
aattatcattacggtggaccaagagcagcgggttcctcttcttacaggaaatcatatggc
gatgactcgagctactactattccggaaagtataacaatagctctcaaggaatgtacagc
aacggtccgagatatcctggtccatcaccagactataaccggaactactacaacaactcc
aagatggtagtaaaacaaccgaaccatggtggaatcagaactggttcatcggtagaagat
aacggcagaagcaaacaattgtattcaagctatacagaagctgctaatgcaaatatcaac
aacccattgccatcaccgccaacacaatggcttggtgcaccgcaaggtgggaatttcagc
ggtggatactatagggaaggaggagttggctatggtgagatgaatggaaagaaagtgatt
tatcagcccaaggcacagcaaagtcagccaggctttaatgaatga
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