Brevundimonas nasdae: KWG56_06635
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Entry
KWG56_06635 CDS
T07529
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bnd
Brevundimonas nasdae
Pathway
bnd03030
DNA replication
bnd03410
Base excision repair
bnd03420
Nucleotide excision repair
bnd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bnd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KWG56_06635 (ligA)
03410 Base excision repair
KWG56_06635 (ligA)
03420 Nucleotide excision repair
KWG56_06635 (ligA)
03430 Mismatch repair
KWG56_06635 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bnd03032
]
KWG56_06635 (ligA)
03400 DNA repair and recombination proteins [BR:
bnd03400
]
KWG56_06635 (ligA)
Enzymes [BR:
bnd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KWG56_06635 (ligA)
DNA replication proteins [BR:
bnd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KWG56_06635 (ligA)
DNA repair and recombination proteins [BR:
bnd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KWG56_06635 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KWG56_06635 (ligA)
MMR (mismatch excision repair)
DNA ligase
KWG56_06635 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KWG56_06635 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
DZR_2
Zn_ribbon_NUD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QYC11638
LinkDB
All DBs
Position
1369855..1372185
Genome browser
AA seq
776 aa
AA seq
DB search
MARAIPDIIPLDDQTPQTAADELAWLASEMARHDALYAEAAPEISDADYDALRARNLEIE
ARFPDLVRPDSPSNKVGAVASSQFTEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPA
DEPIAFVAEPKIDGLSANLLYEKGKLTIGATRGDGRTGEDVTANLKTIADVKQTLAGDDW
PDRIEVRGEVYAPNDAFAAFNADAEAEGRRTYANPRNFAAGSLRQKNAKITAGRPLNFFA
YAWGEHSSDFAETQWEALQKLKAWGFPVNARSKRVEGAEGLIAVYRELERDRAALGYDID
GVVYKVDRIDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHP
VTVGGVVVRNATLHNEDEIERLDVRIGDTVRLQRAGDVIPQILGVVLDQRPADAVPYVFP
DKCPVCGSEAVREGDEVKRRCTGGLICDAQIVERLKHFVGRRAFDIEGLGEKQLIAFHAR
GWIKEPADIFRLARDPERLKQLEKDDGYGETSIRNLIAGIDARRTISLDRFLFGLGVRDI
GEQTSIVLARAFESWAALKAACLQAANGIQTDAWTELASAHAISPRVLTLMTEASPPADD
PWPDAPMDQKIALAFPGMAAPARRSLATMTNDWAGLVRLAGIARNEGPSEMLNQISAVTG
VGPVAALALAHFFHEPHNLEVVAALEAEMTEIVDAERPKADTPVAGKTVVFTGSLERFTR
DEAKARAESLGAKVSGSVSKKTDYVVAGPGAGSKLKDAEKHGVQVLTEDEWLALIA
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgcgattcccgacatcattcccctcgatgaccagacgcctcagacggcggcg
gacgaactggcctggctggcttcagagatggcccggcacgacgccctgtacgccgaggcg
gcgcccgagatctccgacgcagactatgacgccctgcgcgcccgaaatctggagatcgag
gcgcggttccccgatctggtgcgcccggactcgccgtcgaacaaagtcggcgccgtcgcc
tccagccagttcaccgaggtccgccacggcgtgccgatgctgtcgctggacaacgccttc
gacgagggcgaggtgcgcgatttcgtggcccggatcgcgcgtttcctgaaactgcccgcc
gacgagcccatcgccttcgtcgccgaacccaagatcgacggtctgtccgccaaccttctg
tatgaaaagggcaagctgaccattggcgccacgcgcggagacggtcgcacgggagaggac
gtcaccgccaatctgaagaccatcgccgacgtcaaacagacgctggcgggcgacgactgg
cctgacagaatcgaggtgcggggcgaggtctatgcccccaacgacgcctttgcggccttc
aacgccgacgccgaggccgagggccgtcgcacctacgccaacccgcgcaatttcgccgcc
ggctcgctgcgtcagaagaatgcgaagatcacggcgggccgcccgctgaacttcttcgcc
tatgcctggggcgagcattccagcgacttcgccgagacccagtgggaggcgttgcaaaag
ctgaaagcctggggcttccccgtcaacgcccggtcgaaacgggtcgagggcgctgagggg
ctgatcgccgtctatcgcgaactggagcgcgaccgcgccgcgctgggctatgacatcgac
ggcgtcgtgtacaaggtcgaccgcatcgactggcagcgccgcctgggcttcgtcgcccgc
agcccccgctgggccatcgcccacaaattcccggcccagcaggccacgaccgtactggaa
ggcatcgacattcaggtcggacgcaccggctccctgacccctgttgcgcgcctgcacccg
gtgacggtcggcggcgtggtcgtgcgcaacgccaccctgcacaatgaagacgagatcgaa
cgtctcgacgtgcggatcggcgacaccgtgcgcctgcaacgcgccggcgatgtcatcccg
cagattctgggcgtcgtgctggaccagcgccccgcagacgcggttccctatgtcttccca
gacaaatgcccggtctgcggatcagaggccgtgcgcgaaggtgacgaggtcaagcgccgc
tgcacaggcggtctgatctgtgacgcccagatcgttgagcgcctgaagcatttcgtcggc
cgccgcgccttcgacatcgagggactgggcgagaagcagttgatcgccttccatgcccgc
ggctggatcaaggagcccgccgacatcttccgtctggctcgcgaccccgagcgcctgaag
cagttggagaaggacgacggctatggcgagaccagcatccgcaacctgatcgcaggcatc
gacgcgcgccgcaccatttcactggaccgattcctgttcgggctgggcgtgcgcgatatc
ggcgaacagacctccatcgtcctggcccgcgccttcgaaagctgggccgcgctgaaggcc
gcctgtctgcaggccgccaatggcatacagaccgatgcctggacggaactggcctccgcc
cacgccatatcgccccgtgtcctgaccctgatgaccgaggcgagtccccccgccgatgat
ccgtggccggatgccccgatggaccagaagatcgccctcgccttccccggcatggccgcc
cccgcccgccgttctctggcgaccatgacgaacgattgggccggtctggtgcggttggcc
gggatcgcccgcaacgaaggcccgtcggagatgctgaaccagatcagcgccgtcaccggc
gtcgggcctgtggcggccctggccctggcccacttcttccatgagccgcacaatctggaa
gtcgtcgccgcgctggaagccgagatgaccgaaatcgtcgacgcggaacgccccaaggcg
gacaccccggtcgcgggcaagaccgtggtcttcaccggctcgctggaacgcttcacccgc
gacgaagccaaggctcgggccgaaagcctgggcgccaaggtgtcgggctcagtgtcgaaa
aagaccgactatgtcgtcgccggccccggcgcagggtcaaagctgaaggacgctgaaaaa
cacggcgtccaggtgctgaccgaagacgagtggctggccctgatcgcctag
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