Brenneria nigrifluens: EH206_04290
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Entry
EH206_04290 CDS
T06070
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bng
Brenneria nigrifluens
Pathway
bng03030
DNA replication
bng03410
Base excision repair
bng03420
Nucleotide excision repair
bng03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EH206_04290 (ligA)
03410 Base excision repair
EH206_04290 (ligA)
03420 Nucleotide excision repair
EH206_04290 (ligA)
03430 Mismatch repair
EH206_04290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bng03032
]
EH206_04290 (ligA)
03400 DNA repair and recombination proteins [BR:
bng03400
]
EH206_04290 (ligA)
Enzymes [BR:
bng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EH206_04290 (ligA)
DNA replication proteins [BR:
bng03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EH206_04290 (ligA)
DNA repair and recombination proteins [BR:
bng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EH206_04290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EH206_04290 (ligA)
MMR (mismatch excision repair)
DNA ligase
EH206_04290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EH206_04290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QCR03497
LinkDB
All DBs
Position
940162..942216
Genome browser
AA seq
684 aa
AA seq
DB search
MNPLNIESAEAREASSRAAELRRVLRHHEYKYHVEDAPEIPDAEYDRLMRELKSLEEAYP
QLVTADSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTF
CCELKLDGLAVSLLYEEGVLTRAATRGDGATGENITANIRTVGAIPLRLTGDNIPRRLEV
RGEVFMKHSGFEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLL
EGGELPDSHWRRLMQFRRWGLPVSDRIRLCTGSAEVLDFYRHIEQTRGALDFDIDGVVVK
VDDLALQARLGYVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAG
VMVSNATLHNADEIERLGLRIGDRVTVRRAGDVIPQIVGVVETERPENARPIVFPDVCPV
CGSDVERVEGEVVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKT
PADLFRLSAGILTGLDRMGPKSAQNLVGALEKAKSTTLARFLFALGIRDVGEATAANLAA
HFGSLEALFAADEESLLEVPDVGKVVAARVRHFLEEEHNRQVIRELIDPDGINIHWPQPP
AVKAQEIDSPFAGKTLVLTGSLSILSRDEAKDRLTALGARVSGSVSKKTDMVIAGEAAGS
KLTKAQELGIPVIDEAEMMRLLGE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaatccattgaatatagagtcggccgaagcgcgtgaggcaagctcgcgggcagcggag
ttgcgcagggtattgcgtcatcatgaatacaagtatcacgtggaagatgcgccggaaatc
ccggatgccgaatacgatcggctgatgcgtgagctgaaaagcctggaagaggcctatccc
caactggtgacggcggactcgccgacgcagcgcgtcggcgcggcgccgctggcggccttc
gagcaggtgcgtcacgaagtgccgatgctgtcgctggataacgtatttgacgaagagagc
tatctggcgttcagcaaacgcatcggcgaccggctgaaaaacggcgacgatctgaccttc
tgctgcgagctgaagctggacggcctggccgtcagcctgctgtatgaagagggcgtgctg
acgcgcgcggccacgcgcggcgacggcgccaccggcgagaatatcaccgcgaatatccgc
accgtcggcgccatcccgctgcgtctgacgggagataacattccgcgtcggctggaagta
cgcggcgaagtatttatgaagcacagcggtttcgaaaaactcaacgaggaagcccgccgc
accggcggcaaagtgtttgccaacccccgcaacgcggcggccggctcgctgcgtcagctc
gatccccgcatcaccgccaaacgtccgctgacctttttttgctacggcgtcggtttgctg
gagggcggagagctgccggacagccactggcggcgcctgatgcaattcaggcgctgggga
ctgccggtcagcgaccgtatcaggctctgtaccggcagtgcggaagtgctcgatttttat
cgccatatcgaacagacgcgcggcgcgctggatttcgatatcgacggcgtggtggtcaag
gtggacgatctggcgctgcaggcgcgcctcggctatgtcgcccgcgcgccgcgctgggcg
gtggcgtttaaattcccggcgcaggagcagctgacctgggtgcgcgacgtcgaatttcag
gtcggccgcaccggggcgattaccccggtggcgcgtctggagccggtggcggtggcgggg
gtgatggtcagtaacgccacgctgcataacgccgatgagatcgaacggcttggcctacgc
attggcgaccgggtgacggtgcgccgcgccggcgacgttattccgcagattgtcggcgtg
gtggaaacggagcggccggaaaatgcccggccgattgtgttccccgacgtctgcccggtg
tgcggttccgacgtggagcgggtggagggagaggtggtcacccgttgcaccggcggcctg
atttgcggggcgcagcgcaaagaagccctgaagcactttgtttcccgccgggcgctggac
gtcgacggcatgggcgacaaaatcatcgaccaactggtggaaaaagagtatgtcaaaacg
ccggccgaccttttccgactcagcgccgggatattgaccggtctcgaccgcatggggccg
aagtcggcgcagaatctggtcggcgcgctggagaaggcgaaaagcaccaccctggcgcgt
ttcctgtttgcgctgggcatccgcgacgtcggagaagcgaccgccgccaatctggccgcg
cattttggttcgctggaggcgctgttcgccgcggatgaagagtcgctgctggaggtgccc
gacgtgggcaaggtggtcgccgcccgcgtgcggcatttcctggaggaggaacacaaccgg
caggtgatccgcgaactgatcgatcccgacggcatcaatatccactggccgcagccgccg
gcggtgaaagcgcaagagatcgacagtccgtttgccggcaagacgctggtgctgaccggg
tcgctgagcattctgtcccgcgatgaggccaaagatcggctgacggcgctgggcgccagg
gtcagcggcagcgtatcgaaaaaaaccgatatggtgattgccggcgaagcggcgggatcc
aagctgaccaaagcgcaggagctggggatcccggtgattgacgaagccgaaatgatgcgt
ttgctgggggagtag
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integrated database retrieval system
