Bacteroides nordii: K8P02_07375
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Entry
K8P02_07375 CDS
T07941
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bno
Bacteroides nordii
Pathway
bno03030
DNA replication
bno03410
Base excision repair
bno03420
Nucleotide excision repair
bno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K8P02_07375 (ligA)
03410 Base excision repair
K8P02_07375 (ligA)
03420 Nucleotide excision repair
K8P02_07375 (ligA)
03430 Mismatch repair
K8P02_07375 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bno03032
]
K8P02_07375 (ligA)
03400 DNA repair and recombination proteins [BR:
bno03400
]
K8P02_07375 (ligA)
Enzymes [BR:
bno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K8P02_07375 (ligA)
DNA replication proteins [BR:
bno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K8P02_07375 (ligA)
DNA repair and recombination proteins [BR:
bno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K8P02_07375 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K8P02_07375 (ligA)
MMR (mismatch excision repair)
DNA ligase
K8P02_07375 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K8P02_07375 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF5689
BRCT_2
EAD10
Motif
Other DBs
NCBI-ProteinID:
UAK44080
LinkDB
All DBs
Position
complement(1913727..1915727)
Genome browser
AA seq
666 aa
AA seq
DB search
MTAKEKIEELRAELHRHNYNYYVLNTPEISDKEFDDKMRELQDLEQAHPEYKDDNSPTMR
VGSDLNKNFTQVAHKYPMLSLGNTYSETEVADFYERVKKALNDDFEICCEMKYDGTSISL
TYEDGKLIRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPQSFEIRGEILMPWDVFEE
LNREREAREEPLFANPRNAASGTLKSQNSSVVASRKLDAYLYYLLGENLPCDGHYENLQE
AAKWGFKISNAMQKCHTLEEIFDYIKYWDTERKNLTVATDGIVLKVNSLKQQKNLGFTAK
SPRWAIAYKFQAERALTRLNMVTYQVGRTGTVTPVANLDPVQLSGTIVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKITGVDTSARSFMIGEKVNFITNCPECGSKLVRYEGEAAH
YCPNETACPPQIKGKIEHFISRRAMNIDGLGPETVDMFYRLGLIQNTADLYKLTTKDIKG
LDRMGEKSAENIINGIAQSKEIPFERVIFALGIRFVGETVAKKIAKAFKNIEELEDADLE
TLVSIDEIGEKIAQSILNYFANESNRELVNRLKEAGLQLYRTEEDLSGHTDKLAGQSIVI
SGVFTHYSRDEYKDLIEKHGGKNVGSISAKTSFILAGENMGPAKLEKASKLGIRIMNEEE
FLELIS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaaggaaaaaatagaagagctgcgtgccgaacttcaccggcacaattataac
tattacgtattgaatacccctgaaatctcagacaaggaattcgacgacaagatgcgtgag
ttacaagacctggaacaggcacaccctgaatacaaggatgataactctccgacaatgcgt
gtaggaagtgacctcaataagaattttacgcaagtagcacataaatacccaatgttatct
ttgggaaacacatactcggaaactgaagtagcagacttctacgaacgagtaaaaaaagcc
ctgaatgatgatttcgaaatatgttgtgaaatgaaatatgatggaacttcaatttcatta
acatacgaagacggtaagctgatacgagctgtaactcgcggtgatggagaaaaaggagat
gatgtgacagataatgtaaaaacaatccgtagcattccgcttgtactccatggcgacaat
tatccccagtcttttgaaatacgtggagaaattcttatgccatgggatgtattcgaagag
ttgaaccgtgaaagagaagcacgtgaagaacctctattcgctaatccgagaaatgcagca
tcaggaacactgaaatcgcaaaactcctcagtcgtagcttcccgcaaacttgacgcctat
ttatactatctgcttggagaaaatctaccttgcgacggacattatgaaaacctgcaagaa
gctgccaaatggggtttcaaaatttcgaatgccatgcaaaagtgtcacaccttagaggaa
atttttgattatatcaaatattgggatacagaacggaaaaatctgacagttgccacagac
ggcatcgtgctgaaagtaaacagtctgaaacaacaaaaaaacttaggctttacggccaaa
tctcctcgttgggctattgcatacaaatttcaggcagaacgtgcacttacccggttaaac
atggtaacatatcaggtaggaagaacggggaccgtcactccggtagccaatttggatccc
gtgcagctgtccggcaccattgtaaaacgcgcttctttgcataatgcagatatcattgaa
ggacttgatctccacattggcgatatggtatacgtggagaagggtggagaaattattcct
aaaattacaggggtagatacttctgcacgttcattcatgataggtgaaaaagtgaatttt
atcacaaattgtcccgaatgcggaagcaaattagtacgttacgaaggcgaagcagctcat
tattgtcccaacgaaacggcttgtccaccacaaatcaaaggtaagattgaacactttatc
agtcggcgggctatgaacatcgacggacttggtcctgagacagtagacatgttttatcgc
ctgggactaatccagaatacagctgatttgtacaaactgaccacaaaagatatcaaagga
ttggaccggatgggtgaaaagtctgccgaaaatattatcaatggaattgcccaaagcaaa
gaaattccttttgaacgtgtcatcttcgcattaggtattcgctttgtaggtgaaactgta
gcaaagaaaatagccaaagccttcaaaaatatagaagaattggaagatgcggatctcgaa
accctggtaagtattgatgaaatcggtgaaaaaattgcgcaaagcattttaaactacttc
gcaaacgaatcaaaccgcgaacttgtgaatcgtctgaaggaagctggtcttcagctctat
cgtacagaagaagatcttagcggacacaccgataaactggccggtcagtctatcgttatt
agtggcgttttcacccactattcgcgagatgaatacaaagatcttatagaaaaacatggc
ggtaagaatgtaggaagtatttcagctaaaaccagctttattttggcaggtgaaaatatg
ggacctgccaaacttgaaaaagcaagtaaactgggtatcaggataatgaacgaagaggaa
tttttagagctcatatcgtaa
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integrated database retrieval system
