Bacillus nitratireducens: GSN03_01685
Help
Entry
GSN03_01685 CDS
T07605
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bnt
Bacillus nitratireducens
Pathway
bnt03030
DNA replication
bnt03410
Base excision repair
bnt03420
Nucleotide excision repair
bnt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GSN03_01685 (ligA)
03410 Base excision repair
GSN03_01685 (ligA)
03420 Nucleotide excision repair
GSN03_01685 (ligA)
03430 Mismatch repair
GSN03_01685 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bnt03032
]
GSN03_01685 (ligA)
03400 DNA repair and recombination proteins [BR:
bnt03400
]
GSN03_01685 (ligA)
Enzymes [BR:
bnt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GSN03_01685 (ligA)
DNA replication proteins [BR:
bnt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GSN03_01685 (ligA)
DNA repair and recombination proteins [BR:
bnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GSN03_01685 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GSN03_01685 (ligA)
MMR (mismatch excision repair)
DNA ligase
GSN03_01685 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GSN03_01685 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
RNA_pol_A_CTD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
HHH_3
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QUG82245
LinkDB
All DBs
Position
318697..320706
Genome browser
AA seq
669 aa
AA seq
DB search
MSKEIAKKRIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSP
SIRVGGTVLDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVHQGIDDANVRYICELKIDGL
AVSLHYEKGRFIQGATRGDGITGEDITQNLKTIKAIPLRLNEEVTLEARGEAYMPKRSFV
KLNEEKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTIPSHSESL
DFLGELGFKTNPNRRTCETIEDVISYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTT
AKSPRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTVVRRASLHNEDL
IREKDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGEEEEYHMPTHCPACESELVRLEEEVA
LRCINPACPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYSLTKEQLLQ
LERFGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARIFAEHFETMDELVKATEE
ELKTINEIGEKMAQSVVTYFDNEDVLELLKQFKEYGVNMAYKGIKIADLQNVESYFAGKT
VVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLLVAGEAAGSKLAQAEKHNVEVWNE
ERFLQELNK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagagatagcaaaaaaacgtatagaagaactacgtgatttgttaaatacattt
aattatcaatatcacgtattagacaatccttctgtttctgatgcggagtatgaccgtaat
atgcaggagcttataaaattagaagcagagaacccagagtttatgagtgaagactctccc
tccattcgcgttggggggactgttcttgatatatttgaaaaggtaacgcataaatcacca
atgttaagtttaggaaacgcgtttaatgaaggagatttgcgtgattttgatcgaagagta
catcaaggaattgatgatgcgaatgtaagatatatatgcgaattaaaaattgacggactt
gctgtttcacttcattatgaaaaaggacgcttcattcaaggagcaacacgtggtgatggt
ataacgggtgaagatattacccaaaacttaaaaacgattaaagctatcccgctgcgttta
aatgaagaagtaacgttagaagcacgaggcgaggcttatatgccgaagcgttcattcgtt
aagttgaatgaagagaaagaacaaaatggtgaagatgtatttgcaaatccacgtaatgcg
gcagcaggatcgatacgtcaacttgatccgaaaattgcagcaaagcgtaatttatctatg
tttgtgtatggtcttgctaatgtagaagaaaaaacaattccatcccatagtgaatcactg
gatttcttaggtgagcttggatttaagacgaatccaaatcgtcgcacatgtgaaacaatc
gaagatgtaatatcctatgtagaagaatggcaagaaaaacgcccgcatcttgattatgag
attgatggaatcgttataaaagtagacgatgttgctcttcaagaaagcttaggaactaca
gcaaagagtccaagatgggcgattgcttataaattcccggctgaagaagttgttacgaga
ttaacagggattgaattaagtgtcggccgcacaggggttgtaacaccaactgcagagcta
gagccagtgcgagtagctggaactgttgttcgtcgtgcttctttacataacgaagattta
attcgtgaaaaagatattcgaatcggtgactacgttgttgtgaaaaaagctggagatatc
attcctgaagttgtgaatgttatttttgataagcgtactggtgaggaagaagaatatcat
atgccaacgcattgtccagcgtgtgagagtgaacttgttcgtttagaagaagaagtagca
cttcgatgtataaatccggcttgtccagctcaaattcgtgaaggattaattcatttcgtt
tcaagaaatgcaatgaatattgatggacttggagaacgtgtaattacacaactttttgat
gcggattatattcgtacgtttgctgatttatattcattgacgaaagagcagttactacag
ctagaacgtttcggtgaaaaatcagcaacaaatttagtacaagcaattgagaattctaag
gaaaactcattagagcggttattattcggtctgggtattcgtcatgtcggtgcgaaagcg
gcacgcatatttgctgagcatttcgaaacgatggatgagcttgtgaaagcgacggaagaa
gaactaaaaacaattaatgagattggtgaaaaaatggctcaatccgttgtaacgtatttc
gataatgaagacgtattagagctattaaaacaatttaaagagtatggcgtgaacatggca
tacaaaggtataaaaattgctgatttacaaaatgttgaatcgtacttcgcaggaaaaact
gtcgtcttaacagggaaattagaagttatgggccgcagtgaagcgaagaagaaaattgag
gcattaggtggaaaagtaacaggaagtgttagtaaaagtacggatttacttgttgctggt
gaagctgctggttcgaagttagcacaagcagagaagcacaatgttgaagtttggaatgaa
gagaggttcttacaagagctgaataagtaa
DBGET
integrated database retrieval system
