Candidatus Bandiella numerosa: N3Z17_00955
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Entry
N3Z17_00955 CDS
T09014
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bnu
Candidatus Bandiella numerosa
Pathway
bnu03030
DNA replication
bnu03410
Base excision repair
bnu03420
Nucleotide excision repair
bnu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bnu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N3Z17_00955 (ligA)
03410 Base excision repair
N3Z17_00955 (ligA)
03420 Nucleotide excision repair
N3Z17_00955 (ligA)
03430 Mismatch repair
N3Z17_00955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bnu03032
]
N3Z17_00955 (ligA)
03400 DNA repair and recombination proteins [BR:
bnu03400
]
N3Z17_00955 (ligA)
Enzymes [BR:
bnu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N3Z17_00955 (ligA)
DNA replication proteins [BR:
bnu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N3Z17_00955 (ligA)
DNA repair and recombination proteins [BR:
bnu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N3Z17_00955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N3Z17_00955 (ligA)
MMR (mismatch excision repair)
DNA ligase
N3Z17_00955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N3Z17_00955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH_5
DZR_2
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WHA05117
LinkDB
All DBs
Position
complement(209430..211475)
Genome browser
AA seq
681 aa
AA seq
DB search
MNLNLSKVRKRVELLRNEIKKHDELYYIKSSPIITDQQYDELRSELENLESLYPELRDKK
SVTQSVGTKVAKGFAKIRHTYPMLSLSNAFSKEDISDFLIRIKKLIGYGPDDKLELHCEP
KIDGVSFSAHFKNEKLNFAVTRGDGTIGEDITNNIKAIENFPIQVDYDEEFEVRGEVYMS
KSDFIALNEENSKNNKTLFANPRNAASGSLRQLDSIVTRNRRLSYFVWGGRIQDFNNQHE
MMEKFKSLGFIVNGCKLVVDNLEDIISYYDEMCTSRAELNYDIDGLVYKVNSFELQEKMG
NISRAPRWAIAHKFPAEYAETCIEDIFVQVGRTGAITPVAKLKPINVGGVLVTRASLHNE
EEIFRKDIRIGDVVKIKRAGDVIPQVVEVKFEKRNSEVKTFIFPEKCPVCQSAIESFGDD
IVKRCTGGMKCEAQIIEKLCHFISKYAFDIVGLSKQSVLQFYNKGLVKLPADIFKLVSAN
QTLEQPIEKWEGWGEQSVDNLFLSIEKSKKINMDRFIYSLSIRHVGVVTAEILANHFKNI
NNVMELIAKDDAVEILKAVNGVGEIIATSFIEYFKDPYNSQIVKNILHFIDVKQVIIVQN
KLNSQLAGKNVIFTGVLEKYSRDEAQNIAKKLGAKISSTISKKTNYVIYGSNYGSKLNKA
KEMNIKIISEQEFSDMVEENY
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaacttatctaaagttaggaaaagagtagaattacttagaaatgaaataaag
aagcatgatgaattatattacataaaaagttcgccaataattacagatcagcaatatgat
gaattgagaagtgagcttgaaaatcttgaatcattgtatccagaattgcgtgacaaaaaa
agtgtcactcagagtgttgggactaaggttgcaaaaggttttgcaaaaattaggcatacc
tatcctatgctttcactaagcaatgcgttttcaaaagaagacatttcagattttttaatc
agaattaagaaattaattggttatgggccagacgataaattagagttacattgtgaacca
aagatagatggagtgtctttttcagcacattttaaaaatgaaaaattgaattttgcggta
accagaggggatggaacaattggtgaagatataaccaataatattaaagcaattgaaaat
tttcctattcaggttgattatgatgaggaatttgaggttagaggtgaggtatatatgagt
aaatcagattttatagcattgaatgaagaaaatagtaaaaataataaaacactttttgct
aaccctagaaatgctgcatctggttcattgcgacagttagattctatagttactaggaac
agaagattgagttattttgtttggggagggagaattcaagattttaataatcagcatgag
atgatggagaaatttaaatcattgggttttatagtaaatggatgcaaacttgttgtagat
aatttagaagatattatatcctattatgatgaaatgtgtacgagtagggctgagcttaat
tatgacattgatgggttagtttataaagtgaacagctttgagcttcaggaaaaaatgggt
aatattagtagagcaccaagatgggcaattgcacataaatttcctgctgaatacgcagaa
acctgcattgaagatatatttgttcaagttggtagaacaggcgccattactccagttgca
aaactaaaaccgattaatgtaggtggtgtattagtcaccagagcttctcttcataatgaa
gaggaaattttcagaaaagatataagaattggtgatgtagttaaaattaaaagagctggg
gatgtaatcccgcaagttgttgaagtaaaatttgaaaaaaggaattcagaagttaaaaca
tttattttcccagaaaaatgtccagtatgccaaagtgcaattgagagttttggtgatgat
atagtcaagagatgtactggtgggatgaaatgtgaagcacaaataatagaaaaattatgc
cattttatttcaaaatatgcatttgatattgtggggctatcaaagcaatcagtattgcaa
ttttataataaagggctggtaaaactacccgcagatattttcaaattggtaagtgcaaat
cagactctagagcaaccaatagaaaagtgggaaggatggggcgagcagtctgtagacaat
ttatttttgtcgattgaaaaatcaaaaaaaattaatatggataggtttatttattcactc
agtattaggcatgtaggtgtcgtaactgcagagattcttgctaatcacttcaaaaatatt
aataatgtaatggagctgattgcaaaggatgatgctgtagaaattctaaaagcagtaaat
ggcgttggagaaataatagcgacaagttttatagaatattttaaagatccatataactca
caaatcgttaaaaatattttacattttatagatgttaagcaagtgataattgtgcaaaac
aaactcaatagtcagttagctgggaaaaatgtaatttttactggtgtgttagaaaaatat
tcccgagatgaagcacaaaatattgcaaaaaaattgggagcaaaaatttcatctacaatt
tccaaaaaaactaactacgttatttatgggagtaactatggttcaaaattaaataaggca
aaagaaatgaatattaagataatttctgagcaggagttttcagatatggttgaggagaat
tactaa
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