Borrelia nietonii: bhYOR_000553
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Entry
bhYOR_000553 CDS
T09752
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bny
Borrelia nietonii
Pathway
bny03030
DNA replication
bny03410
Base excision repair
bny03420
Nucleotide excision repair
bny03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
bhYOR_000553 (ligA)
03410 Base excision repair
bhYOR_000553 (ligA)
03420 Nucleotide excision repair
bhYOR_000553 (ligA)
03430 Mismatch repair
bhYOR_000553 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bny03032
]
bhYOR_000553 (ligA)
03400 DNA repair and recombination proteins [BR:
bny03400
]
bhYOR_000553 (ligA)
Enzymes [BR:
bny01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
bhYOR_000553 (ligA)
DNA replication proteins [BR:
bny03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
bhYOR_000553 (ligA)
DNA repair and recombination proteins [BR:
bny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
bhYOR_000553 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
bhYOR_000553 (ligA)
MMR (mismatch excision repair)
DNA ligase
bhYOR_000553 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
bhYOR_000553 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
DNA_ligase_A_M
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
UPA09252
LinkDB
All DBs
Position
569231..571240
Genome browser
AA seq
669 aa
AA seq
DB search
MIEDVEDEILRLKNIIKRWNREYYVDSSPSVGDLTYDKALLRLQDLESKYPEYKTLDSPT
FRFGSDLLNDFEEVKHSFPILSLDKTYDIKGLSLWIEKMVLESSSSGLHTGISVEPKIDG
CSIVLHYKDGILEKALTRGDGRVGNDVTENVKTIRNVPLRIDEKIELVLRGEIYITKENF
LKINHTLKNPYVNARNLASGILRRISSKEVANFPLDIFVYDILYSSLKPNTNHDAFDKLK
QFGFKVNPFCEFFGGKNLEAGIIAHVKKIEALRDSFEYEIDGVVLKIDSFILRKILGSTS
HHPKWSIAYKFESCTGMSKVVDIIVQVGRSGKITPVAHVEKVLVAGASITNASLYNQDYI
DSVGLNVGDIVVISRRGDVIPAVDFVIEKLAVGSFKIPSNCPSCKMTLIKEGAHLFCVNR
HCSCRIIEQVKYFCSKKCMNIVGLSGKTIEFLFEKKFISSEVELYTFNCDRLINLKGFNL
KRINNLKRSIEDSKSRPFRKLLLGMGIKDLGESTILVLINNNLNSFDIISTLCKNKEDAL
ARLLKIKGIGERIALNIIEAFNDKTILDKFNFFKELGFKMEEDNTNDAADDSFLFGKKFC
ITGSFKGYSRDVLIEKLIKKGAVFRSSVTKRLDFLLVGEKFGSKVQKANNLGIKTLSLFD
IKDFVDLDD
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaagatgtagaagatgaaatcttacgtttaaaaaatatcattaaaagatggaac
agagagtattatgtcgattcttcacccagtgtgggtgatttgacttatgataaagctctt
ttgcgccttcaggatttggaaagtaaatatcctgaatataaaaccttggattctcctact
tttaggtttggtagcgatcttttaaatgattttgaagaagttaaacattcttttcctata
ttaagtttggataaaacttatgatattaagggattatcattgtggattgagaagatggtg
ttagagagttctagctcaggattgcatactggtatttcagttgaacctaaaattgatggg
tgttcaattgttctccattataaagatgggatacttgagaaagctttgactaggggagat
ggaagggttggcaatgatgttactgagaatgttaaaacaattagaaatgttcctttgcgt
attgatgaaaagattgaattagtgttgcggggtgagatttatattactaaggaaaatttt
ttgaaaataaatcacacattaaaaaatccttatgttaatgctagaaatttagcctcaggt
atattgagaagaataagtagtaaagaagttgctaattttcctttagatatttttgtttat
gatattttatattctagtttgaaaccgaatactaatcatgatgcttttgacaaacttaag
caatttggatttaaagttaatcctttttgtgaattttttggtggcaaaaacttagaagca
ggtattattgctcatgttaaaaagatagaggccttaagagattcttttgaatatgaaatt
gatggtgttgtgctgaagattgacagctttattttaaggaaaattttgggatctacttct
catcatccaaagtggtcaatagcttataagtttgaatcttgcacaggtatgagcaaagtg
gtcgatataattgttcaggttggccgcagcgggaagattactcctgttgcacatgtagaa
aaagtgcttgttgctggggcttctattactaatgcaagtctgtataatcaagattatata
gattctgttggtttaaatgttggagatattgttgtgatttcaagacgtggggatgtgatc
cctgctgttgactttgtaatagaaaagcttgcagttggtagttttaaaattcctagtaat
tgtccttcatgtaaaatgactttaataaaagaaggcgcacatcttttttgtgtaaataga
cattgttcttgtcgaataattgaacaggtaaaatatttttgtagtaagaaatgcatgaat
attgtaggactttcggggaaaacaatagagttcctttttgaaaagaaatttatatcttca
gaggtcgagctttatacttttaattgtgataggcttattaatctaaagggttttaatctt
aagcgaataaataatttaaagcgttcaattgaagatagtaaaagtaggccgtttagaaag
ttgcttcttggtatgggaattaaggaccttggagagagtacaatattagtgctaattaat
aacaatttaaactcgtttgatataattagtactctttgcaaaaataaagaggatgctctt
gccagacttttaaagattaagggaataggggagaggatagctttaaatatcattgaagca
tttaatgataagactattcttgataagtttaatttttttaaagaattagggtttaaaatg
gaggaagataatactaatgatgctgcagatgattcttttttatttggtaaaaaattttgc
attacaggttcttttaaagggtattctagggatgtacttattgaaaagcttattaagaaa
ggtgctgttttcagatcttcagttactaagcgtttagattttttacttgttggagaaaag
tttggatcaaaagtacaaaaagccaataatttgggtattaagaccctcagtctttttgat
attaaagattttgtggatttagatgattaa
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