Bombella sp. ESL0368: GN304_05750
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Entry
GN304_05750 CDS
T06372
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bob
Bombella sp. ESL0368
Pathway
bob03030
DNA replication
bob03410
Base excision repair
bob03420
Nucleotide excision repair
bob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GN304_05750 (ligA)
03410 Base excision repair
GN304_05750 (ligA)
03420 Nucleotide excision repair
GN304_05750 (ligA)
03430 Mismatch repair
GN304_05750 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bob03032
]
GN304_05750 (ligA)
03400 DNA repair and recombination proteins [BR:
bob03400
]
GN304_05750 (ligA)
Enzymes [BR:
bob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GN304_05750 (ligA)
DNA replication proteins [BR:
bob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GN304_05750 (ligA)
DNA repair and recombination proteins [BR:
bob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GN304_05750 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GN304_05750 (ligA)
MMR (mismatch excision repair)
DNA ligase
GN304_05750 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GN304_05750 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QGT75287
LinkDB
All DBs
Position
1302071..1304149
Genome browser
AA seq
692 aa
AA seq
DB search
MTGTPTPAQRHAELEEKIARWNEAYHGQDNPEVSDAEYDNARLELVMLEARHPELKRRDG
VSSQVGAAPNPAFGKVKHRAPMLSLDNVFSEEEFTQFVSRIGRFLGLDETQTDGLKFVAE
PKIDGLSISLTYEKGQLTVATTRGDGTTGEDVTANVRTISSIPQTLPAPFPDLLEIRGEI
FMSRADFLALNRQQEERGEKPFANPRNAAAGSLRQLDASVTARRPLGLFAYGLGYNTGIT
VKTHSDWLDQLKTWGFTVNPLSRAINHASDVPAYVETLARERPDLDYDIDGIVFKIDAID
LQTRLGFVGRAPRWAIAWKFPAEQAITRLNEIEIQVGRTGALTPVAHLEPINVGGVIVSR
ATLHNEDEIRRLDVRPGDLVRIQRAGDVIPQVLGVVDADRQDRAAPFHFPDHCPVCHAHA
ERIGDEAVRRCSGGLTCPAQTVERLIHFVSRKAFDIDGLGERSIRSFHDLGLVQRPGDIF
RLHEHRDRLQKLEGWGTQSVDNLLQAIEDRRTISLPRFIYALGIRRIGERNAQLLARHYQ
SFPVWHAAMLAAIRPESEERTALSAIMGIGPAIAEEVAAFFDEEHNRAALDDLTPSLTIS
EETGPDADDEGPAPLAGQVMVFTGSLTTMSRAEAKAIAERLGAQVTDSVSRRTTLVVLGE
KAGSKAKKAHELNIRTLDEMEWRGMVGLAETD
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaccggaacccccacccccgcccagcgtcatgccgaactggaagaaaagatcgcccgc
tggaacgaggcctatcatggacaggacaaccccgaagtctccgatgccgagtatgacaat
gcccggctggagctggtcatgctggaggcccgccatccggaactgaagcgcagggatggt
gtctcctcacaggtcggagctgctcccaatccggcctttggcaaggtgaagcaccgtgcc
cccatgctctcgctggacaacgtcttcagcgaggaggagttcacccagttcgtcagccgg
atcggccggtttctcgggcttgacgagacccagacggacgggctgaaatttgtggccgaa
cccaagattgacggcctttccatcagcctgacctacgaaaaaggccagctgacggttgcc
acgacccggggcgatggcacgacgggtgaggatgtcaccgccaacgtgcggaccatcagc
tccattccccagaccctgcccgctccttttcctgacctgctggaaatccggggcgaaatc
ttcatgagccgggccgacttcctggctctcaacagacagcaggaagagcggggcgaaaag
ccctttgccaatccacgcaatgccgcagccgggtcgctccgccagctggacgcctctgtc
acagcccgtcgccctctggggctgttcgcctacgggctgggttacaataccggcataacc
gtcaagacccattcggactggctggaccagctgaaaacatggggattcactgtcaatcca
ctctcccgggccataaaccatgccagtgacgtgcctgcctatgtggagaccctggccagg
gaacggcctgaccttgattatgacattgatggcatcgtcttcaagattgacgccatagac
cttcagacacgccttggttttgtaggccgtgcccctcgttgggccattgcatggaagttc
ccggcggaacaggccatcacccgactgaatgagattgaaattcaggtggggcggactggt
gccctcacccccgtggcgcatctggaacccatcaatgtcggcggtgtcatcgtatcccgg
gccaccctgcataatgaagatgaaatccgccgtctggatgtccgccccggcgacctcgtg
cgcatccagcgggccggggatgtcatcccgcaggtactgggcgtcgtggatgcagaccgg
caggaccgggccgcccccttccattttcccgatcactgccccgtctgccacgcccatgcc
gaacgcatcggcgatgaagcggtccgccgctgctccggaggcctgacctgcccggcccag
acggtcgaaaggctcatccatttcgtctcccgcaaagcgtttgacattgacgggctggga
gagcgcagcatccgcagttttcatgacctcgggcttgtccagcggccgggagacattttc
cgcctgcatgagcatcgggaccgcctccagaaactggaaggctgggggacacagtcggtc
gacaacctgcttcaggccattgaggaccgccggaccatcagtctcccccgcttcatctac
gcgctcggcatccggcgcattggcgagcgcaatgcccagcttctggcccgccactaccag
agctttcccgtctggcatgcggcgatgctggcagccatcaggcccgaaagcgaagaacgg
accgccctgagtgccatcatgggcatcggccctgccattgctgaagaagttgccgccttc
ttcgatgaggaacataaccgggctgcgctggatgatctcaccccctccctgaccatcagc
gaggagaccggtcctgatgctgatgatgagggtccagcgcctctggctggtcaggtcatg
gtgttcacggggtctctcaccaccatgtcccgagccgaagccaaggccattgccgaacgt
ctgggcgcacaggtgacagacagcgtctcccgtcgcacgacactggtcgtactgggagaa
aaagctggctccaaagccaaaaaagcccacgagctgaacattcgcacgcttgatgaaatg
gagtggcgcggcatggtcgggctggccgagacagactga
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