Candidatus Blochmannia ocreatus (nom. nud.): M9405_02470
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Entry
M9405_02470 CDS
T08515
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bocr
Candidatus Blochmannia ocreatus (nom. nud.)
Pathway
bocr03030
DNA replication
bocr03410
Base excision repair
bocr03420
Nucleotide excision repair
bocr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bocr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9405_02470 (ligA)
03410 Base excision repair
M9405_02470 (ligA)
03420 Nucleotide excision repair
M9405_02470 (ligA)
03430 Mismatch repair
M9405_02470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bocr03032
]
M9405_02470 (ligA)
03400 DNA repair and recombination proteins [BR:
bocr03400
]
M9405_02470 (ligA)
Enzymes [BR:
bocr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M9405_02470 (ligA)
DNA replication proteins [BR:
bocr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M9405_02470 (ligA)
DNA repair and recombination proteins [BR:
bocr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M9405_02470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M9405_02470 (ligA)
MMR (mismatch excision repair)
DNA ligase
M9405_02470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M9405_02470 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
URJ24991
LinkDB
All DBs
Position
complement(566484..568274)
Genome browser
AA seq
596 aa
AA seq
DB search
MNFFKKAKKLKQKLRYWEYLYYVKNEPVVSDEQYDAVLLELQRLEKIYPYLVTDDSSTCR
VGGMPQKSFKKIRHKIPMLSLNSVIEESKLIFFDKRIKKNLHSTCDITYCCELKIDGLAS
SLLYKNGKLVYAATRGDGIIGEDITKTARVIPSIPICLQNYNCVNFNNTFPNILEIRGEV
FISKESFLKLNEIKVQKGEKIFSNARNAASGLLRQLNSDVKLTSFLSFYCYGIGYFSGKL
DLPDSHWKRLQLCRSWGFPVSEHIFLYSKIDQILAYYSNMKIIRSDLHFNIDGVVIKVNS
CLFQNKLGCGSKAPNWAIAYKFPPVIGLTKVRRVAFQVGRTGIITPIAYIDPIVISSVVI
RKVNIHNINSVKKLGLMIGDTVRIQRSGDVIPKILDVVMSKRTNYAKSIEFPYLCPECGT
KIIARYHTSILRCNAGLSCLAQRKAMFRHFVSRKAMNISGIGSKIIDQLVDKKLISTLSD
LFVLKKHELLALNRLSMLSIERLLTAIESSKKVTLARFIYALGIYNVGESIATNLALSYK
KFENLVTADFESLSSLEYIGPIIAENIYYFFRDSDNMKNIKKFFEPSIGINLYSII
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttttaaaaaagcaaaaaaattaaagcaaaaattacgttattgggaatattta
tactacgtaaaaaatgagcctgtggtatctgatgaacaatatgatgcagtattattagag
ttacagagattagagaagatatatccatatctagtgacagatgattcttctacttgtcgt
gtaggcggaatgccacagaaaagttttaaaaaaatacgtcataagatacctatgttatct
ttaaatagtgtaattgaagaatcaaagttgatattttttgacaaaagaattaaaaaaaat
ctgcatagtacttgcgatattacgtattgttgtgaattaaaaatagatggattggcttct
agtttattatataaaaatggaaaattagtgtatgcggcaactcggggtgatggcataata
ggagaagatatcactaaaaccgcgcgtgtcataccatcaatacctatttgtttacagaat
tataattgtgttaatttcaataatacttttccaaatatattagaaattagaggggaagtg
tttatatctaaagaatcttttttaaaattaaatgaaattaaagtgcaaaagggagaaaaa
attttttctaatgctagaaatgctgcatcaggtttattacgtcagttaaattctgatgtt
aaacttacaagtttcttaagtttttattgctatggtattggttatttttctggtaaattg
gatttgccagatagtcattggaaaagattacagttatgtagatcttggggattccctgtg
agtgaacacatatttttatatagtaaaatagatcaaatattggcatattattctaatatg
aaaataattcgatctgatttacattttaatattgatggagtcgtgattaaagtaaatagt
tgcttatttcaaaataaattaggttgtggatctaaagctccaaattgggccattgcttat
aaatttccaccagtaataggattgactaaagtgcgtcgagtagcatttcaagtaggtcgg
actggtattattactcccattgcatatatagatcctattgtaatttctagtgttgtcatt
agaaaagttaatattcataatataaattcagtaaaaaaattaggattaatgattggtgat
acggtacgtattcaaagatctggtgatgttatcccaaaaattttggatgtagtaatgtca
aaacgtaccaattatgcgaaaagtatagagtttccatatttatgtccggaatgtggaaca
aaaattatagctcgatatcatacatcaattttacgttgtaatgctggattatcgtgtctt
gcacaaagaaaagcaatgtttagacattttgtgtctagaaaggctatgaatatttcaggg
atagggagtaagataatagatcaattggttgataaaaaattaatatctactctttcagat
ttgttcgtgctaaaaaagcatgaattactcgctttaaatagattgagtatgttaagtatt
gaacgtttgttaacagctattgaatcttctaaaaaagtgacgttagcgcgatttatatat
gcattaggtatttataacgtaggggaatcaattgctactaatttagcgctttcatataaa
aaatttgaaaatttggttactgctgattttgaatctttgtcgtctttagaatatataggc
ccaataattgctgaaaatatatattatttttttagagactcagataatatgaaaaatatt
aaaaaattttttgagccttctattggtataaatttgtactctattatataa
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