Brassica oleracea (wild cabbage): 106294297
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Entry
106294297 CDS
T04124
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106294297
09123 Folding, sorting and degradation
03018 RNA degradation
106294297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106294297
03041 Spliceosome [BR:
boe03041
]
106294297
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106294297
mRNA degradation factors
5'-3' decay
Lsm complex
106294297
Spliceosome [BR:
boe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106294297
Complex C
U2 snRNP components
106294297
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
vATP-synt_E
Gin
Motif
Other DBs
NCBI-GeneID:
106294297
NCBI-ProteinID:
XP_013585309
LinkDB
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Position
C5
Genome browser
AA seq
93 aa
AA seq
DB search
MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVE
IDDETYEEIVRKLKRKVLFLFVRGDGVILVSPP
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcgaggaagacgccaccgttagggagccactggatctgattcgactgagtatt
gaagagagaatctacgtcaagctccgatccgaccgcgaactccgtggcaagctacacgct
tttgatcagcatttgaatatgattttgggtgatgttgaagaggttatcacgactgtagaa
atcgacgacgagacatacgaagagattgttcgtaaattgaaaagaaaggttctgtttcta
tttgtgagaggagatggagtgatcttggtgtcgccgccttga
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