Brassica oleracea (wild cabbage): 106303943
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Entry
106303943 CDS
T04124
Name
(RefSeq) ABC transporter I family member 21-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106303943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106303943
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106303943
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
AAA_25
ORC-CDC6-like
SMC_N
AAA_5
AAA_28
AAA_23
AAA_15
AAA
NACHT
AAA_18
PduV-EutP
SRP54
AAA_33
DLIC
AAA_22
Zeta_toxin
AAA_30
AAA_24
Arf
AAA_14
AAA_16
Motif
Other DBs
NCBI-GeneID:
106303943
NCBI-ProteinID:
XP_013595759
UniProt:
A0A0D3D2W2
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Position
C7:2873208..2874848
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AA seq
283 aa
AA seq
DB search
MAEKDAMARSDGAIRVNGMQFSYDVQDPIFFDFSLDLPAGSRCLLVGANGSGKTTLLKIL
AGKHMVGGKNIVQVLNRSAFHDTDLVCSGDLSYLGGSWSKTAGSAGEIPLQGDFSAEHMI
FGVEGIDPVRREKLIDLLDINLKWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLD
VVARMDLLEFFKEECEQRGATIVYATHIFDGLETWASHLAYIHGGELKLSAKLKEIKDLE
TSPNLLSVVENWLRSETKVEKKTKKKPVATSPFMSSRRMAYYR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaaagatgcgatggccagaagcgacggtgcgattagggttaacggaatgcag
ttttcttacgatgtccaagatcctatcttcttcgatttcagcctcgatctccccgccgga
tctcgctgcctcttggttggtgctaatggatctggcaagacgactttattgaagattttg
gctggaaagcatatggttggagggaagaacattgtgcaagtcctgaatcgctctgctttt
cacgacacagaccttgtctgtagtggtgacttgtcttatcttggaggttcttggagcaaa
accgctggttccgctggtgagattcctctccagggagatttctcagcagagcatatgata
tttggagttgaagggattgatcctgtgagaagagagaaactgattgatcttcttgatatc
aatcttaagtggcgtatgcataaggtttctgatgggcagagacgccgagtgcagatatgc
atgggtcttttacatccattcaaggtattattactggacgaggtcactgtggacctagac
gttgttgctaggatggatttgttggaattctttaaagaagaatgtgaacagagaggagct
actattgtatatgcaactcatatttttgacggactagagacatgggctagtcatttggcc
tatatccatggaggggagctgaagctctctgctaaactgaaggagatcaaggatttagaa
acatccccaaatttgctctctgtggttgaaaattggcttcggtctgaaaccaaagtggag
aagaagactaagaagaaacctgttgccacgtctccatttatgtcatctagacgaatggcg
tactaccgatga
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