Brassica oleracea (wild cabbage): 106306185
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Entry
106306185 CDS
T04124
Name
(RefSeq) uncharacterized protein LOC106306185
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
boe03036
]
106306185
03400 DNA repair and recombination proteins [BR:
boe03400
]
106306185
Chromosome and associated proteins [BR:
boe03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
106306185
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
106306185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
zf-Di19
Motif
Other DBs
NCBI-GeneID:
106306185
NCBI-ProteinID:
XP_013598155
LinkDB
All DBs
Position
C7:37658087..37668610
Genome browser
AA seq
1591 aa
AA seq
DB search
MSSRRLVKRALILDEDDEDDVVYSFKVLLPNSTSVPLTVTNPGPEMPMETFVNLVKEEYD
KARKSCLLMTKRRRVDWNLGGKFHLESDSEKMEGMVRFAAFKPNSLHIIRLDDGSGVTST
MYENLWDLTPDTDLLKELPENYSFETALADLIDNSLQAVWSCSPGERRLISVDVSADWIS
VFDTGRGMDSSEENAIVKWGKIGGSLHRSEKTFAIGGKPPYLKPFFGMFGYGGPYACMFL
GRRTLVSSKTKESKKVFTLQFEKEALIGNHSVSGKHWKTSGGMRDPTEEENKLSPHGSFT
KVEIFESEFDMSKIYQLQCRLKDIYFPYIQCDELSKTGRTERPVEFQVSGEDLAEIAGGE
VAITNLNSKGEEFSFQIRFSLASEKRKGKPQQANARLKFVYFPIVQGKESIEKILEGLQE
EGCKVSESFETFGRVSIRRLGRLLPEVRWDSIPFMQRGNRASTLQKSCRRVKCFIDLDAG
FSPTPSKTDLASQNPFSVALRNFGSKQTDKDKDTDVKMVIHREGKSVTQLEQNYQDWVMK
MHDAHDEEATSGEDEAILVLESLDKKALGILRDAVRVHKVVTRNGKLWKRGQNIKLLKGA
CGGVHNGNIYATIDYFLIEGFEDEAGGDTRILCRPIDCPKKEGCKLSCIDGSWRLELQKS
LTLPITIIDSGKCLHADADEWTRKLERQQEKAPSKIDLLDERDCRELNIDGELPVSVRVG
RAPPQQIVAVIRPASFTSVTPSKKLEQKHVVSMEGKEMVMVVKLVDPNTKPSAKVATKSV
CSQRVFPTSCKGIGGLYIFSLGSKFPNLFKRAGTYNFSFSIGDSIRCNKTVVVKPSSKAA
KWKLDDSLDPLPCNVRVGSCLGPLRIACFDEYENQIQFTSVPSLEVELKANAGFDLKIDD
FETNLIDGGSTLMIKEMLVETDALDKIGPSYDATLEIRAQDKPLSVSIACKVNPGPLKRV
EVNNPQAFENLLPGSTVENLILEMFDGFNNHIAEGTSVLINTEGYCIEDWMGVNRKVDGS
GCIDLSGILKVTEGYGKHVSFSVVSDCKEIFRKESQIEERELRLVTERPESCIAGSNLTS
LIFKVTDSDGSLDTSIHHDEKTRCIHTLSVESDSSSVESGIRYAFVHGSCKIPSLSLPET
EGIFSVKVFHSRYPELHVNLEILITPAQTIERDDDIGCSTPYSRMTSTPQSGMASATPFP
RVTPTPSLGLERTPCSQFGVLAIRSPSLNGSCPSGVMDIPQYTQSLKQELSTYEAQQEEI
DERIKCLEAEQEQDEQELITLQASLDSICAALPECLSTRESMMKHIEEEHQDTAASVFCS
LTKKVPPPRSLFLSIKGGVFGIVALLGSVASTSLSRILSAYLGKEKMLALVCKSSAYRAS
YAEYLRLQDEAARLGRSITNPPQVICLNAYTPWRSGLVENDPQRRLDMANPSLRNGGLIP
GFKGYAVNMIELAVRDLDIGTNSHGLRETLFYGLFGDLQVYETGKDLEAALPYIKDGVDA
VSLDGVISNRDGFLFSGCCVPDVHFPVTVPENHEKTLVKMEITREKKRKREEEIVEERGL
LRKIEKKMKKATKKYERFSAMADSQDRINKC
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atgagctctaggagattggtcaagagagcattgattctagatgaggacgatgaggatgat
gtggtttacagcttcaaggtcctcttgcctaacagcactagtgtgccactcacggtcact
aacccaggacctgagatgccgatggagacttttgtcaacctggtgaaggaggagtatgac
aaagcacgtaaaagctgtttgttgatgaccaagaggagaagggttgactggaacttgggt
ggaaagttccatcttgagtcagatagtgaaaagatggaaggaatggttcgctttgctgcg
ttcaagcccaactcgttacacataatacgtcttgatgacggttctggtgtaacttccacc
atgtatgagaacctgtgggatttgacacctgacactgatcttctgaaagagctacctgaa
aattatagctttgagacagctcttgcggatctaatagataattctttgcaagctgtgtgg
tcttgttcccccggagagcgaaggctgattagtgtggatgtttctgctgattggatctca
gtctttgatactggaagaggaatggacagtagtgaggaaaatgctatcgttaaatgggga
aaaatagggggctcattacatagatctgaaaagacctttgctattggaggcaaaccacca
taccttaagcccttctttgggatgtttggatatggaggcccttatgcttgtatgttcttg
ggaaggcgtactttggtgtcttctaagacgaaagagtccaagaaagtattcactttgcaa
ttcgagaaagaagccttgattggcaaccactcagtctctggaaaacactggaagactagt
ggtggcatgagggacccgacagaggaagaaaataagttatcgcctcatggcagtttcaca
aaggttgagatatttgaatcagaatttgacatgtccaaaatatatcaactacagtgcagg
cttaaggatatttactttccttacattcagtgtgacgaactttccaaaactgggaggact
gaaaggcctgtagagtttcaggtcagtggagaagatttagctgagatagcaggtggtgaa
gttgccattaccaacctaaattccaagggtgaagagttttcgtttcagatccggttcagt
cttgcaagtgaaaaacgaaaagggaaacctcaacaagcaaatgctcgcctcaaatttgtt
tattttccaatcgtccagggaaaagaaagcatcgagaaaattttggagggattacaagag
gaaggttgcaaagtttccgaaagcttcgagacttttggtcgtgtttcaataagaaggctt
ggtcgtctacttccagaagtccgttgggattcaataccgttcatgcaaagaggtaacaga
gcgtctactttgcagaaatcttgccgaagagtaaaatgctttatcgatttggatgctggt
tttagcccaacgccctccaaaaccgaccttgcaagccaaaatcctttctcagtggctcta
agaaacttcggtagtaaacagacagataaggataaggatactgatgtcaaaatggtgatt
caccgagaaggaaaatcagtcacacaattggagcagaattatcaggattgggttatgaag
atgcatgatgcccatgatgaagaggctacgtcgggtgaagatgaagctattctcgttctt
gaatccttggataaaaaggctcttggcattttgcgtgatgctgtgagggtgcacaaggta
gtcacgagaaacggaaagttgtggaaacgtggtcagaatataaagcttctgaaaggagct
tgtggtggggttcacaatggtaatatctatgctaccattgactatttcttaatagaaggg
tttgaagacgaagcaggcggtgatactcggattttatgcaggcctatcgattgccctaag
aaagaaggatgcaagctttcatgcatcgatggaagttggagactggaacttcagaagtct
ttaacattgcctattactataatcgactctggaaagtgcctacatgcagatgcagacgaa
tggactagaaaacttgaaaggcaacaggaaaaggcaccttccaaaattgatttgctggat
gagagggattgcagagaattgaacattgatggggaactaccagtttctgtgcgtgttggg
agagctcccccgcaacaaatcgtggcagttatccgacctgcatccttcacatccgttaca
ccgtcaaagaagttggaacaaaagcatgttgttagtatggagggcaaagaaatggtcatg
gtagtaaaactggtagacccaaatacgaaaccaagtgctaaggttgccaccaaatcagtg
tgttcgcagcgtgtgtttcctacatcctgtaaagggattggtggtctttacatcttctcc
cttggctccaagtttccgaacctcttcaagagagctggcacttacaacttttctttctct
atcggggactcgattaggtgcaacaaaacggttgttgttaaaccttcttctaaggcagca
aagtggaaacttgatgatagtctggatcccctgccgtgcaatgttcgagttggttcgtgt
cttggacctctccgtatagcctgctttgatgagtatgaaaatcagatacagttcacttct
gttccaagcctggaagttgaactgaaagccaacgctggatttgatctcaagattgatgac
tttgagaccaacctgatagatggaggatcaactctcatgatcaaggaaatgctcgttgag
actgatgcattagacaagatcggcccaagttatgatgcaaccttggagatacgcgcacaa
gacaaacctttaagtgtctcgattgcttgtaaagtgaaccccgggcctctgaaacgagtt
gaagtgaataatcctcaggcttttgaaaatttgcttccaggttctactgttgaaaatttg
attctggagatgttcgatggattcaataaccacattgcagaagggaccagtgttctgata
aacactgagggctattgtatcgaagactggatgggcgtcaaccgtaaggttgatggtagt
ggctgcattgatctctctggcatcctcaaagtcacagaaggctatggaaaacatgtctca
ttctctgttgtgtctgattgtaaagagatcttccggaaagagtctcaaatcgaggaacga
gagctaaggcttgtaacagagcggcccgagtcctgtattgccggttcaaatcttacgagc
ctcattttcaaagtgacggattcagatggttctttggatactagtatccatcatgacgaa
aaaaccaggtgtatccacaccctgagcgttgaatctgattcaagcagcgttgagagtgga
atcagatatgcctttgttcatggctcctgcaaaattccttctctttccttacctgagacc
gagggtatcttctccgtcaaggttttccattctcggtatcctgagcttcatgtgaattta
gagattctgataacgcctgctcaaacaattgaaagagatgacgacattgggtgttcaaca
ccttactcaaggatgacatcaacacctcaatcagggatggcttcagccactccgtttcca
agagtgacgccaactcccagtttaggattggaacgaactccatgttcacagtttggagtt
ttggccattaggtcaccgtcattgaatggcagttgcccatctggcgtgatggatataccg
cagtacactcagagtctaaaacaagaactcagtacatacgaggcacagcaagaggaaata
gatgagcgcataaaatgtttggaggctgaacaagaacaggacgagcaagagttgattact
ttgcaagcttctctggattctatctgtgcggcgctcccggaatgcctatccactagagag
tccatgatgaaacacattgaagaggagcatcaagacactgcagcatcggtcttctgttct
ttgaccaaaaaggttccccctccgcggtctttgtttctgtcaatcaaaggaggagtgttt
ggcattgtagcccttcttggttctgttgcctccacttcactaagcaggatattatctgca
tatttggggaaagaaaaaatgcttgcgctggtatgcaaatcatcagcatatagagcaagc
tatgctgagtacctgaggcttcaagatgaagcagctaggctcggacgatccataaccaat
cctccgcaggttatttgtcttaatgcatacacaccttggagaagtggacttgtggaaaat
gatccacagaggagactagacatggctaacccttccctacgcaatgggggtcttatacca
ggtttcaaaggttacgctgtgaacatgatcgagttggctgtaagggacctggatatagga
acaaacagtcatgggcttagagagacgctcttctatggactttttggagacttgcaagtg
tacgagaccgggaaggatcttgaagcagcccttccttacatcaaagatggtgtagatgct
gtgtctctagatggtgtgatctccaacagagatgggtttttattctctggatgctgcgtt
ccagatgttcattttccagtaacagtaccagagaatcacgagaagactttggtgaagatg
gaaataacaagggagaagaagagaaagcgtgaggaggagatagttgaggagagaggtttg
ttgaggaagatagagaaaaagatgaagaaggcaacgaagaagtacgaacgtttctcagcc
atggctgactctcaggaccgtataaataaatgttaa
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integrated database retrieval system
