Brassica oleracea (wild cabbage): 106312542
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Entry
106312542 CDS
T04124
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
boe
Brassica oleracea (wild cabbage)
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boe03400
]
106312542
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
106312542
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
zf-C3HC4
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
Prok-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
106312542
NCBI-ProteinID:
XP_013605557
LinkDB
All DBs
Position
C8
Genome browser
AA seq
831 aa
AA seq
DB search
MELRPRNKAIVSLDQGVNLEEDEEAYDMSSSDNDSTDSEFQVSDDDVDGNDDLPNPVPAP
VDAVPLAVFVPLPNANPPRGTKRKSTTPVIKEKGKLLWELWEKEDEKWVDQHMTEDVDLD
QHNNAVITETAEPPPDLIMPLLRYQREFLAWASKQEHSVSGGILADEMGMGKTIQAISLV
LAQRQVDRPVGCTLVLCPLVAVSQWLSEIDRFTSPGSTKVLVYHGAKREKNGNEFKKYDF
VLTTYSTVENEFRKCVMPGKRQCEYCSKWFLPNRLVTHHAYHCGPSSAKALRKSKLNMNP
LAVMERERAAAEAEEASSKGKRSKKKKTKQALEEEDSVNRKKSVLYSIKWNRVILDEAHY
IKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQISPYSYYFCKDCDCKIL
DYTTHANCHSCPHNAVRHFCWWNKNVTNPITEPAYGNEERGKRAMILLKHKVLKDILLRR
TKLGRAADLALPPRIITLRRDALDVKESDYYESLYQNSQSQFNTYIEAGTIMNNFAHIFD
LLTRLRQAVDHPYLVVYSSSGGANANLNDENKKDQECGLCHEPAEDNVVTSCEHVFCKAC
LIDFAASLGEVSCPTCSTLVTMDWTTKADIEQQANKTTIKGFRASSILNRIKLDDFQTST
KIEALREEIRLMVERDGSAKAIVFSQFTSFLDLINYTLGKCGVGCTQLVGSMSMAARDVA
INKFREDPNCKVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPI
RVVRFIIENTVEEKILKLQKKKELVFEGTVGGSQEAIGKLTAEDMRFLFTI
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcgacctcgcaacaaggcgattgtttcattggaccaaggtgtgaatctggag
gaagatgaagaagcttatgatatgtcctcttcagataatgattctaccgactctgagttt
caagtttctgatgatgatgttgatggtaatgatgatttaccaaatcctgtccctgcacct
gtggatgctgtccctcttgctgtctttgtgcctctgccaaatgcaaacccaccaagaggc
accaaaaggaaaagcaccaccccagtcatcaaagagaaaggcaagctcctgtgggagctc
tgggagaaagaggatgaaaaatgggtcgaccaacacatgacagaggatgtagacttggac
cagcacaacaacgccgtcatcaccgaaaccgccgagccgcctcctgatctcatcatgccg
ctcctaaggtaccaaagggagtttttagcatgggcgtcgaaacaagaacactcagtctca
ggaggcatactagcagacgagatggggatggggaaaaccatacaagccatctctctcgtc
ctcgcgcaacgccaagtcgacagaccagttggttgcacgcttgtgctttgtccactcgtt
gctgtctctcagtggctaagcgagatcgatcggttcacatcaccaggaagcactaaggtt
cttgtctaccacggagccaagagagagaagaacggtaacgagttcaagaagtacgacttt
gtgctgacgacgtactctaccgtcgagaatgagttcaggaagtgtgtgatgcctggcaag
aggcaatgcgagtactgcagcaaatggtttcttccgaacaggcttgtgacccaccatgcg
tatcactgtgggccatcttctgcgaaggctctgagaaaatctaagctgaatatgaaccct
cttgctgtaatggaaagagagagagcagcagccgaggctgaagaggctagtagcaagggg
aagcgatctaagaagaagaagactaaacaagctttagaggaagaagattcagtgaataga
aagaaatctgttttgtattctattaaatggaacagggtcattttggatgaggctcattac
atcaaagagagacgtagcaacactgcgagagctgtttttgctttggaggctacttataga
tgggctttgagtgggactccgctccagaatcgtgttggagagctttactctctgatacgc
ttcctgcagattagtccatactcttattacttctgcaaggactgtgactgcaagattctt
gattacactacgcatgcaaactgtcacagctgccctcacaatgcagtgcggcatttctgt
tggtggaacaagaatgtgaccaacccaataacggagcctgcttatggaaacgaggaacgg
ggcaagagagccatgatattgcttaaacacaaagttctgaaagacatcctcctaagacgt
actaaactgggccgggcagctgatcttgcgcttcctcctagaatcatcactctgaggagg
gatgcactagatgtaaaagagtctgattactatgaatcactataccaaaacagtcaatcc
caattcaatacgtatatcgaggctgggacaattatgaataactttgctcatatatttgat
cttctaacccgtctgagacaggctgttgatcatccataccttgtggtgtattccagttct
ggaggtgctaatgctaacttgaatgatgagaacaaaaaggaccaagaatgtggtctatgc
catgagccagctgaggacaatgttgtgacttcatgtgaacatgtgttctgtaaagcttgt
ttgattgatttcgctgcatccctgggggaagtctcctgtccaacatgctcaacactagtg
actatggactggactactaaagctgacatagagcagcaggcaaacaagacaacaattaaa
ggatttagagcctcaagcattttaaatcggattaagctggatgattttcagactagtaca
aagatagaggctttgagggaagagataaggctcatggtcgagagagatgggtctgcgaaa
gcaatagttttcagccagttcacatcattcttggatctgataaactacacactcgggaag
tgtggggttggttgcactcaactggtgggaagcatgtcaatggcagctagagatgttgct
atcaataaattcagagaagatccgaattgcaaagttttcttgatgagtttgaaagctgga
ggggttgctctcaacttaacagtcgcttcacatgtgtttatgatggatccgtggtggaac
ccagcggttgagaggcaagcacaagacagaatacataggatcgggcagtacaaaccaatc
agggttgtgagattcataatagagaacacagtggaggaaaagattctgaagcttcaaaaa
aagaaggaacttgtgtttgaagggaccgttggtggttctcaggaggccataggaaagttg
acagcggaagatatgaggtttctgtttaccatctaa
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