Brassica oleracea (wild cabbage): 106316451
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Entry
106316451 CDS
T04124
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106316451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106316451
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106316451
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
Arf
AAA_29
AAA_23
nSTAND3
ORC-CDC6-like
AAA
AAA_30
Zeta_toxin
AAA_7
Motif
Other DBs
NCBI-GeneID:
106316451
NCBI-ProteinID:
XP_013609798
UniProt:
A0A0D3EIC9
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Position
C9:54374122..54376228
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AA seq
324 aa
AA seq
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MEEEKRDTTVEISGLRFTYPGIDGHPPPGSKPLIEDFSLKLNSSERCLLVGSNGAGKTTI
LKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISA
EKMIFGVAGIDPKRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEIT
VDLDVLARADLLAFLRKECQERGATIIYATHIFDGLEDWPTHIVYVANGKLQLAMPMEKV
KETSKKSLMRTVESWLRKERDEERKTRKERKANGLPEFETRAQESRVTGDPARMLNNGWA
AGRLHSTIAGGEDHFVLSSNRVLR
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagaagcgagatacaacggtggagatctccggattacgattcacgtatcca
ggaatcgatggccatccacctccgggatcgaaaccgctcatcgaggatttctctctgaag
ctcaactcgagcgaacggtgtctcctcgtcggatctaacggcgccgggaagacgacgata
ctgaagatattgggagggaaacacatggtggagccgcacatggttagggttcttggtcga
tcggcgtttcacgacaccggattgacatcttcgggtgatctctgctatctcggcggcgag
tggaggcgtgacgtggcatttgcaggatttgaagttccgatacaaatggatatatcggca
gagaagatgatattcggagtggctggtattgatccaaagagaagagatgaattgatcaag
gtgttggatatcgatatctcatggagattgcacaaggtctctgatggccaaagaagacgc
gtccagatctgtatgggactcctcaagcctttcaaggttctccttttggatgaaatcact
gttgatcttgacgttctcgccagagccgaccttttggcatttctgagaaaggaatgccaa
gaacgaggagctaccattatctacgccactcatattttcgatggccttgaggattggcct
acacacattgtgtatgtagcaaacgggaagttacagttagcaatgccaatggagaaagtg
aaggaaacaagcaagaagtcattgatgagaacagttgagagttggttgaggaaagaaaga
gacgaggagaggaaaacaaggaaagaaaggaaagccaatgggcttcctgagttcgaaaca
cgtgctcaagaaagccgtgtcaccggtgatcctgctcggatgctcaacaatggctgggct
gccgggaggcttcactctaccattgcaggcggagaagatcatttcgtcttaagctcaaac
agggttctcagataa
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