Brassica oleracea (wild cabbage): 106318775
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Entry
106318775 CDS
T04124
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
106318775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106318775
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
106318775
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
106318775
NCBI-ProteinID:
XP_013612358
UniProt:
A0A0D3E5Z0
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All DBs
Position
C9:complement(16758121..16764621)
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AA seq
934 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEESGLGALDITRPNPNGFEFDNLYLDMNGIIHPCFHP
EGKHAPATYDDVFKSMFEYIDHLFTLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRAAKDA
AEAEAEEEMLRQDFEIGGQILSAKEKAETSDSNVITPGTPFMAVLSVALQYYIQSRLNRN
PGWRFVKVILSDSNVPGEGEHKIMSYIRLQRGLPGFDPNTRHCLYGLDADLIMLSLATHE
VHFSILREVIAYPGQQEKCFVCGQTGHFAADCPGKSGIPNAASDIPIHKKKYQFLNIWVL
REYLQYELAIPDPPFTINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRK
EFTAMGGYLTDSGEVLLDRVEHFIQAVAANEDKIFQKRTRIKQSMENNEEMKQRSRRDPS
EIPPEPIEDKIKLGEPGYKERYYAEKFSTTNPEEIEQIKQDMVLKYVEGLCWVCRYYYQG
VCSWQWFYPYHYAPFASDLKNLSDLEITFFIGEPFKPFDQLMGTLPAASSNALPGEYRKL
MTDPSSPILKFYPSDFEIDMNGKRFSWQGIAKLPFIEEKLLLASTRKLEETLTVEERQRN
SVMLDLLYVHPTHPLGQRVMQYYHFYHQLPPNECLPWMIDPNASQGMNGFLWFSERNGFQ
TRVVSPVNGFPCIEQNRALNVTYLNPAKHSHIPEPPRGAIIPDKILTPADIKPFPALWHE
DNSNRRRQARDRPQVAGAIAGHSLGEAAHRLIKNTLNMKSSTGSASGLIDPNSYNRNIPG
NYHYGGPRAAGSSSYRKSYGDDSSYYYSGKYNNSSQGMYSNGPRYPGPSPDYNRNYYNNS
KMVVKQPNRGGIRTGSSVEDNGRSKQLYSSYTEAANANINNPLPSPPTQWLGAPQGGNFS
GGYYREGGVGYGEMNGKKVIYQPKAQQSQPGFNE
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcgttctacagatggctcgccgaccgataccccaagtcaattagcgac
gtcgttgaggaagaatcgggtcttggtgccctagatatcaccagacctaaccctaacgga
ttcgaatttgataatttgtacctcgacatgaacggtatcatccatccctgtttccatcct
gaaggaaagcatgcacctgccacatacgatgatgtattcaaatcaatgttcgagtacatt
gaccatctatttactttagtgcgtcccaggaagcttctttacttggctatagatggagtt
gcaccaagagcaaagatgaatcagcagcgttctcggcgattcagagctgcaaaggacgca
gcagaggctgaagctgaggaagagatgttgagacaagattttgagattggggggcaaatc
ttgtctgctaaagagaaggcagaaacctctgattcaaatgtcattactcctgggaccccg
tttatggctgtgctctcagtagctcttcagtattacatacagtctaggttaaatcgtaac
cctggttggagatttgttaaggtgattctctctgattcaaatgttccgggggaaggagaa
cacaagataatgtcatacattcgtctacaacgtggtcttcctggtttcgatccaaataca
cggcattgtctatacggtctggatgcagatttgataatgctctctctagccacacatgaa
gttcacttttcaatcttaagagaggttatcgcttaccctggccaacaagagaaatgtttt
gtgtgtggacaaactggtcattttgctgcagattgccctggaaaatcaggtatcccaaat
gcagcatctgatattccaatccacaagaaaaaatatcagttcctgaacatctgggtgctg
cgagaatatctgcaatatgaattggccatcccagatcctcctttcaccatcaacttcgag
agaattattgatgactttgtattcctttgcttctttgttggcaatgatttcctgcctcat
atgcctacattagaaattcgagagggggctataaacttgctgatgcatgtttacagaaag
gaatttacagctatgggaggctatctaactgattctggtgaggttttgctagatagggta
gagcatttcattcaagctgtcgcggcaaatgaagataaaatatttcagaaaaggacgcgg
ataaaacagtcaatggaaaacaatgaagaaatgaaacaaagatcaagaagagacccatct
gaaataccacctgaaccgatagaggataagattaagctgggagagcccggctacaaggag
aggtattatgctgagaaatttagtacgaccaatccagaggaaattgagcaaatcaaacaa
gacatggtactaaaatatgttgaaggtttgtgctgggtttgccggtactactaccaaggt
gtatgctcttggcaatggttttacccataccattatgccccatttgcttcagatcttaag
aatctatctgatttggaaatcacatttttcattggagagccctttaaaccttttgatcag
ttaatgggaaccctgccggctgcaagctcaaacgctttgcctggagaataccggaagttg
atgactgatccctcatctccgatcctgaaattttacccttctgattttgagattgacatg
aatggaaagcgcttctcttggcagggtattgcgaaacttcctttcattgaggagaagtta
ttgttagcatctacaaggaagcttgaagaaacgctaacggtggaagaacggcaacgcaac
agcgtgatgcttgatttgttatacgtacaccccactcatccactgggccagcgggttatg
cagtactaccacttctaccaccagttgccaccaaatgaatgtcttccatggatgattgac
ccgaatgctagccaagggatgaacggttttctgtggtttagtgaaaggaacggttttcaa
actagagttgtttcccctgtcaatggcttcccatgcattgagcagaaccgagccttaaat
gttacatacttgaatcctgccaaacattctcatatcccagaaccaccaagaggagctatc
attccggacaagatcttgacgccagcagatataaagccatttcctgctttatggcacgaa
gacaatagcaaccgacgccgacaagcccgagatagaccacaagtggctggtgctatagcc
gggcattcactgggagaagcagctcatcgtctgatcaaaaacacccttaatatgaaatct
tccactggttcggcttcaggattaattgacccgaactcatacaaccgaaatataccgggt
aattatcattacggtggaccaagagcagcgggttcctcttcttacaggaaatcatatggc
gatgactcgagctactactattccggaaagtataacaatagctctcaaggaatgtacagc
aacggtccgagatatcctggtccatcaccagactataaccggaactactacaacaactcc
aagatggtagtaaaacaaccgaaccgtggtggaatcagaactggttcatcggtagaagat
aacggcagaagcaaacaattgtattcaagctatacagaagctgctaatgcaaatatcaac
aacccattgccatcaccgccaacacaatggcttggtgcaccgcaaggtgggaatttcagc
ggtggatactatagggaaggaggagttggctatggtgagatgaatggaaagaaagtgatt
tatcagcccaaggcacagcaaagtcagccaggctttaatgaatga
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