Brassica oleracea (wild cabbage): 106318934
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Entry
106318934 CDS
T04124
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106318934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boe03400
]
106318934
Enzymes [BR:
boe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106318934
DNA repair and recombination proteins [BR:
boe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106318934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
106318934
NCBI-ProteinID:
XP_013612558
LinkDB
All DBs
Position
C9:complement(40391615..40398134)
Genome browser
AA seq
1203 aa
AA seq
DB search
MTEEIKLSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFAAVRLIIPSLDRERGS
YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLSVKELNDLLDRLASSENRGEKTSVLSTLIQKTNAQEMKWVIRIILKDLKLGMSER
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSDLIVQNIMADRCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLTER
HGLLRKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHSAADVERFFKETVENRDEGV
VLKDLGSKWEPGDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLADR
AEANVYPRRFMSFCRVGTGLSDEELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESESMQDNPKVIKSSKRGGEKKNASLVPSQFIQTDVSDIKGKTSIFSNM
IFYFVNLPRSHSLDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHF
SWVLDCCSRNILLPLQPKYFLHLTDASRTKLQDEIDEFSDSYFFDLDLEGLKQVLSNAKQ
SEDSKSIEYYKKKLCPEKRWSCFIGCCIYFHLYCETLSIEEEALLGIMAKRLALEVLMGG
GKVSHNLSHASHLVVLSTAEETLDFTSVSKSFSEKEKRLLLKRRLHVVNSNWLEDSLQRE
QKLSEDVYTLRPKSMEESDTEESDKSEHDTTEVASGVSAQTEEPASSKMAVTSSRGRSST
RAGNKRGRSSTNSVKRVQRRRGKQPSKIGGSETEESDTASEEKASTRLSDDIAEETGDTQ
RNSRRGRSAKRGKSRVAQPQRVQRSRRGNKPLKIGGDESEENDDFDDKKNDSAEEENKEE
TGEPDKAKQRDNTVTVEEASSKDSRNAKTEIDREEKIQIHEDPLQAMLMNMIPSLSLRNT
SRTTGDASTANVCGESESSERRKLGAETDNTCVMNAEAGEVPPPVKKKKVSYRDVAGELL
KDW
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaattaagcgtactagtgtctctgttcaactggattcagaagagc
aaaacctcatcccagaaacgctccaagttccgcaagttcctcgacacctactgcaaaccc
tccgattacttcgccgccgtccgtctcatcatcccgtcgctcgaccgagagcgaggcagc
tacggtctcaaggagtctgtgctcgccacgtgtctcatcgacgccctcggaatctctcgc
gatgctcccgacgcggttcgccttctcaattggcgcaaaggaggaaccgctaaggctgga
gccaacgccggaaacttctctttgattgctgctgaggtactgcaacgtaggcaagggatg
gcgtcgggtgggttgagtgttaaggagttgaatgatttgcttgatcgtttggcttcgagt
gagaacagaggggagaagacttctgttctttctacgctgattcagaagacgaatgcacag
gagatgaagtgggtcattaggatcattcttaaagatttgaagctggggatgagcgagagg
agcatatttcaggagttccatccagatgctgaggacttgtttaatgtcacttgtgacttg
aaactagtctgtgaaaagctcagggatcgccaccaacgtcacaagcgccaggatatagaa
gttggaaaagctgtacgaccccagttagctatgcgtatcagtgacgtgaatgctgcttgg
aagaagctccacgggaaagatgtagttgctgagtgcaaatttgatggggatcgcattcag
atacacaaaaatgggactgagatacattacttctctaggaacttccttgaccattctgaa
tatgcacatgccatgtcggatcttatcgtacaaaatataatggctgacaggtgtatcctt
gatggtgaaatgttggtttgggatacatctcttaatcggtttgctgaatttggttcgaat
caggaaatagccaaagcagcaagggagggtctcgacagccatagacagttatgttatgtt
gcctttgatgttctttatgttggcgatactagtgtcatccaccagagtttaacagaacgg
cacggactcctgaggaaagtggtgaagccgttaaaaggccggcttgaagttttagtgcct
gaaggtggtctcaatgttcatcgcccttcaggggaaccaagttggtctattgtggttcat
tctgcagctgatgttgagcggtttttcaaagaaacagttgaaaatagggatgaaggagtt
gtgcttaaagacctgggatcgaaatgggaacctggagatcgcagtggcaagtggttgaag
ttgaagcctgaatatgtccgggctggttctgatctagatgttcttataataggaggatac
tatggctctggccgtcacggaggagaggtagcacagtttctcgttgggttggctgaccgg
gcagaggcaaatgtgtatcccaggcgatttatgtcgttttgtagagttggcacaggactt
tctgatgaagagcttaacactgttgtaagcaaactgaagccttatttcagaaaaaatgaa
cacccaaagaaggccccaccaagcttttatcaggtcacaaatcactcaaaagagagacct
gatgtttggattgaaagcccggaaaaatcaataatactctccatcactagtgacatcagg
acaataaggtctgaggtttttgtcgcaccttacagcctgaggtttcctcgtattgataaa
gtaagatacgacaaaccttggcatgaatgtctcgatgtgcaagcttttgtggaattggtg
aactcaagtaacggcaccacacagaaacagaaggaatccgaaagcatgcaggacaatccg
aaagtcattaaatcgtccaagagaggaggagagaaaaagaatgcgtcacttgtcccatct
cagtttattcaaactgatgtatcggatatcaagggcaagacctcaatcttctccaatatg
atattttattttgtaaacctgcctcggtcccattctcttgatacattccacaaaatggtg
gttgagaatggagggaagttctcgatgaacttaaacaattcagtgactcattgcattgca
gcggaaagcagtggaataaagtatcaggcagcaaaacgtcaaagagatgtcatccacttt
tcatgggtcttagactgttgttcacggaatattctgcttcctttgcagccaaagtacttc
ctccatctcactgatgcttcaaggaccaaattacaggatgaaattgacgagttttccgat
tcttatttctttgatttagaccttgaaggtctcaaacaggtcttgagcaatgccaagcaa
tcggaagactcaaaatccattgaatactacaagaaaaagctatgtccggagaaaagatgg
tcctgcttcatcggttgctgcatttactttcacctctattgtgaaacattgagtattgaa
gaggaagctctgttgggaatcatggctaagagattagcgcttgaagtcttaatgggtggt
ggtaaagttagccataatctttctcatgcctcgcaccttgtagtcctttctacagcagaa
gagactttggattttacttcagtttcaaaaagtttcagcgaaaaggagaaacgtcttttg
ctgaagagaaggctacatgttgttaactcgaactggttagaggacagtttgcaaagagag
caaaaactaagcgaggatgtgtacactctgaggcctaagagtatggaagagtcggatact
gaagaatcagataaatctgaacatgatacaacggaagtagcttccggtgttagtgctcaa
accgaagagccagcttcctcgaaaatggcagttacgagttcaagaggacggtcgagtact
cgagctggtaataaaaggggaaggtcttctacaaactcagtgaaacgagtacagagacgc
agagggaaacagccttctaagataggcggaagtgaaacagaggagagtgatacggcttcg
gaagagaaggcttcaacaagactcagtgatgatatagcagaagagactggtgatactcaa
agaaactctaggagaggaagatctgcaaagagaggaaagtctcgtgtggcacaaccccaa
agagtacagagatcaagaagaggcaacaagcctttgaagataggaggagatgagtctgag
gaaaatgatgattttgatgacaagaaaaatgattccgcggaggaggaaaacaaggaagaa
acaggagagcctgacaaagcaaagcaaagagataacacagtaacagttgaagaggcctcc
tcaaaagattctagaaatgcaaagaccgagatagatagggaagagaagatacaaatccat
gaggatccattacaagcaatgttgatgaacatgatcccaagcctcagtctgagaaacaca
agccgaactacgggcgacgctagtacggctaatgtttgtggtgagagtgagtcttcagag
agaagaaaacttggcgccgagactgataatacgtgtgtgatgaacgcagaggcaggtgaa
gttcctcctcctgtgaagaaaaagaaagttagctaccgcgatgttgcaggagaactgctc
aaagactggtga
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