KEGG   Brassica oleracea (wild cabbage): 106342859
Entry
106342859         CDS       T04124                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106342859
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:boe03021]
    106342859
Enzymes [BR:boe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     106342859
Transcription machinery [BR:boe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     106342859
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 106342859
NCBI-ProteinID: XP_013637356
UniProt: A0A0D3BVX2
LinkDB
Position
C4:complement(23695845..23702850)
AA seq 1447 aa
MEEECEELQVPMGTLKSIRFSISNNKDRKNMAVMDVEAANQVTDSRLGLPNPDSICRSCG
SKDRKVCEGHFGVINLKYPVINPYFLKEIATLLNKICPGCKYMRKKQSQSTEDWPERCRY
CTSNTGYPLMKFRVTTKEVFRRSGIVCEVSDDNLFKLSKRGLSSLPPDYWEFLPKDSNID
ESCLKPSRRILTHAQVYALLCGIDERLIRKDIPMFDSLPLTSFPVTPNGHRVSEMVNQFT
GARLVFDERTRIYKKLVGFEGNGLELSARVIECMQYSRLFSENMSPSQESANPYQKKSDT
PKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPRRIAERLQVSENLNDWNRER
LVTSCFHKLLERGETHVRRGGSLVAIRVIDDLQTGDSILRTLKDGDTVLMNRPPSIHQHS
LIAMSVKVLPTTSVVSLNPICCLPFRGDFDGDCFHGYVPQSIQAKVELDELVALDKQLVN
RQNGRNLLSLGQDSLTAAYLVNVETNCFLNRAQMQQLQMYCPFELPPPAIIKASSSEPQW
TGMQIFGMLLPPGFEYTCPLNDVVVSSGELLSSSDGSAWLRDGEGNFIQGLLKEHKEKVL
DIMYSTQEMFSQELQMRGLSVSLTDLYLASDPESRRNLTEEISYGLQEAEQVCNKQQLMV
ESRRDFLAGNVEDLSADFDRFCYERQRSATLSKLAVSAFKDAYRDVQSLAYRYGDHSNSF
LIMSKAGSKGNIGKLAQHSMCVGLQNSSVALSFGFPRKLTCASWNDPNSPLRGAKREDQT
GHESFVPFGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADIPGALNRKLMFFMRDIYAA
YDGTVRNSFGNHLVQFRYETDDAEEDMAGEAVGSLSACALTEAAYSALDQPISLLETSPL
LNLKNVLECGSKKGLKEQTMSLYLSETLSKKKHGFEYGALDIKSHLEKLSFSEIVSTSMI
IFSPRTNTKMPMSSWVCHFHISKKVLKQKQLDVGSVVSSLNKQYANRKKELKLDVIDLEI
QSTNHCSWDDKSMEDDRFCITVTVLETSTHGSLELDAIRLVLIPFLLDSPVKGYREIKKV
EILWVDRPKAPIRNKKHMGGELFVKVTMHGVRGKKNIWSALLETCLPIMDMIDWTRSHPD
NIRQCCSVYGIDAGRSIFLADLESAVSDTGKGMLREHLLLVADCLSVTGEFVALNPKGWS
KQRQAESTPAPFTQACFSSPSQCFLKAAKEGVTDELQGSIDALAWGKVPSFGTGDQFEII
ISPKDHGFSSTPVDVYDFLSSTATLPKRKASSLPKSDKFTLQPFPLLDTALSKAVKTLDG
KGLTRSQLRMIFTWDDIEKLSRSLKRILYNYEIDATLNERDERLLMMALLFHPHRDEKIG
PGFQGIKVANSKHGNARCFEVVRTDGTTEDFSYHKCVLGATEIIAPKRVNFYKAKYLRNG
TVQAGTI
NT seq 4344 nt   +upstreamnt  +downstreamnt
atggaagaagaatgcgaggagcttcaggtgcccatggggactctaaagtccataaggttt
agcatttcgaataacaaagaccgaaaaaacatggctgtcatggatgttgaagctgcaaat
caggttactgattcccggttagggctccccaatccagattctatatgcagatcatgtggc
agcaaagatagaaaagtttgcgaagggcattttggggttattaacctcaagtacccagta
atcaacccttatttccttaaggagatagctacactattgaacaagatctgccctggatgt
aaatacatgcggaaaaaacagtctcagagtactgaagactggcctgagagatgtagatat
tgcacttcaaatacaggttaccctctgatgaagtttcgggtaacgacgaaagaagtgttt
aggagatccggaattgtctgtgaagtgagtgacgacaatctgttcaaactcagtaaacgg
ggactatcatcactacctccagattattgggagtttctgcctaaagactctaacatcgac
gaaagctgtttgaaaccaagcaggcggattctaactcatgcacaggtttatgcattgttg
tgtgggattgatgagagactcatcaggaaggatattcccatgtttgactctcttcctctg
acatcttttccagttacgccaaacggtcatcgtgtatccgaaatggtcaatcagttcacc
ggggctcgactagtttttgatgaacggactcgtatctacaagaaactagttggctttgaa
ggaaatggtcttgagctgagtgctcgtgtgatcgaatgcatgcagtattcaagactcttt
tcagaaaacatgtcaccgagtcaagaatctgcaaacccttaccagaagaagtcagacact
cccaaactgtgcggtctaagattcatgaaagatgtgctgcttggtaaaagaagcgaccat
acgttcaggacagtagttgtgggcgacccttctctcaagcttaacgagatcggtatacct
cggaggatcgctgagaggcttcaagtatcagagaatctcaacgactggaacagagaacgc
ctcgtcacttcctgtttccacaagctcctcgagagaggagagactcacgtgagaagagga
ggtagcttagtagctatccgcgtcatcgacgatctccaaacaggagacagcattttgcgg
acgttgaaagatggagacactgtgttgatgaacagaccgccttcgattcatcagcactcg
cttatcgcaatgtctgtcaaagtcctccctactacttccgttgtctccctgaaccctatc
tgctgtttgccctttcgcggcgacttcgatggagattgttttcacgggtacgttccacag
tcgatccaagccaaggttgagctcgacgagcttgtggctttggacaagcagcttgttaat
agacagaatggtcgtaacttgctttcgttaggacaggacagcttgacagcggcttatctt
gttaacgtcgagacaaactgttttctgaaccgagctcagatgcagcagcttcagatgtac
tgtccctttgagcttcctccgcctgcgattatcaaagcttcgagtagtgagccgcaatgg
acggggatgcagatctttgggatgcttctgccgccagggtttgagtatacttgccctctg
aacgatgtggttgtaagcagcggagagcttttgtcttcctctgatgggtctgcttggtta
cgtgacggcgaaggaaacttcatccagggtttgctgaaggaacataaagagaaagtgctt
gacatcatgtactccactcaagaaatgttctctcaggagttgcagatgagaggactgagt
gtttctttaacggatctgtacttggcctctgatccggagtctcggagaaacttgacagag
gagattagttacggattgcaagaagctgaacaagtctgcaacaagcagcagcttatggtc
gagtcacgtagagacttcctcgcgggtaatgtagaagatttgtctgcagattttgaccgg
ttctgctacgagagacagagatcagcgaccttaagcaaacttgcggttagtgcattcaaa
gatgcttacagagacgtccaatctctggcgtataggtacggagaccactctaattcgttt
ctcatcatgtccaaagctggtagcaaagggaacatagggaagcttgctcagcacagtatg
tgcgttggtctacaaaactcttcagtcgcgttgtccttcgggttcccacggaagctgact
tgcgcctcatggaacgatccgaacagtccgcttcgcggggcaaagagagaagaccaaacc
ggtcatgagtcgtttgtcccgttcggtgtcattgagaactcgtttctaacgggtctgaat
ccgttggagtcttttgttcattcagtgacgagccgggacagctcattcagcggtaacgct
gatatcccgggggcgcttaacaggaaactgatgttctttatgagggacatatacgctgct
tacgacgggacggtgagaaactcattcgggaaccatttggttcagtttcgttatgagact
gatgatgcagaagaagacatggccggtgaagcagttggatcactttctgcttgtgctctc
accgaggctgcttacagcgcgcttgatcagcccattagccttcttgaaacttcgcctctt
ctgaatcttaagaatgtgttagagtgtgggtcgaagaaaggtctaaaagaacagacgatg
tctttgtatttgtctgaaacgctttctaagaaaaagcacgggttcgaatacggtgcactg
gacatcaagagccacttggagaagctcagtttctcagagattgtttcaacgtctatgata
atattctctccgaggacaaacacaaagatgcctatgagctcgtgggtttgccattttcac
atctccaagaaagtactgaagcagaaacaactggatgtcggatctgttgtctcttcatta
aacaagcagtacgcaaacaggaagaaagagctgaagcttgatgtaattgatttagagata
caaagcacaaaccactgttcttgggatgataaatcaatggaagatgatagattctgcatc
acagttactgttcttgaaacctccacacacggttctttggaacttgatgctattcgactt
gtcttgatcccttttcttcttgactctcctgtcaaaggctaccgagagattaaaaaggtg
gagatcttatgggttgacagaccaaaagcgccgataaggaacaagaaacatatggggggt
gagcttttcgtgaaggttacaatgcatggagttcgtggcaaaaagaacatctggagcgct
cttcttgaaacctgtcttcccattatggatatgatcgattggacaagaagccatcctgat
aatatccgacaatgctgctcggtttatggaatagacgctggacgtagcatcttcctagcg
gatttggagtctgctgtgtctgatactggtaaagggatgcttcgagaacatctgcttctt
gtagcggattgtctctccgttaccggggagtttgtggcattaaaccccaaaggttggagt
aaacaaagacaggctgagtccactcctgcaccttttactcaagcttgcttctcgagccca
agtcaatgctttctcaaagctgctaaggaaggtgttacagacgagcttcaaggatctatc
gacgcattagcttgggggaaagttccttctttcgggactggagatcagttcgaaatcatc
atctccccaaaggatcatgggtttagtagtacaccagtagacgtgtatgactttctgagt
agtacagcaacgcttccaaagagaaaggcaagctccttgcccaaatcagacaagttcacg
ctccagccgttccccttgctcgatacagctctgtccaaggcagtgaagacactagatggg
aaaggactcacaaggtcgcagctcagaatgatctttacatgggacgacattgaaaagctt
tcccggtcactgaaacgtatcctctacaattacgagatcgatgctacgttgaatgagagg
gatgaaagacttttgatgatggctcttctctttcacccccacagagatgagaagatagga
ccaggcttccaaggaatcaaggtggctaattctaagcatgggaatgctcgttgctttgag
gtggtgagaacagacggaacaacagaagatttctcttaccacaagtgtgtgttgggagca
acagagatcattgcacctaagagggtaaacttctacaaggccaagtaccttagaaacggt
acggtgcaggccggtactatctag

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