Bosea sp. F3-2: FQV39_28190
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Entry
FQV39_28190 CDS
T06223
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bof
Bosea sp. F3-2
Pathway
bof03030
DNA replication
bof03410
Base excision repair
bof03420
Nucleotide excision repair
bof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FQV39_28190 (ligA)
03410 Base excision repair
FQV39_28190 (ligA)
03420 Nucleotide excision repair
FQV39_28190 (ligA)
03430 Mismatch repair
FQV39_28190 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bof03032
]
FQV39_28190 (ligA)
03400 DNA repair and recombination proteins [BR:
bof03400
]
FQV39_28190 (ligA)
Enzymes [BR:
bof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FQV39_28190 (ligA)
DNA replication proteins [BR:
bof03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FQV39_28190 (ligA)
DNA repair and recombination proteins [BR:
bof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FQV39_28190 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FQV39_28190 (ligA)
MMR (mismatch excision repair)
DNA ligase
FQV39_28190 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FQV39_28190 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
QEL26053
LinkDB
All DBs
Position
6058268..6060433
Genome browser
AA seq
721 aa
AA seq
DB search
MSDAKDTALSETSIAELTPRKAKAEHKQLAAQVQAANDAYFQEDQPIMDDAAYDAKRRRL
VALEEAFPELKETGGVSGKVGAKPSGKFAKIRHRVPMLSLDNAFSDEAVAEFVGRVYRFL
GRKEEDGIDFTAEPKIDGLSLSLRYEKGELVAAATRGDGEEGEDVTVNARTISEIPATLA
GPDVPEIAEVRGEVYLGHADFAGINERQREKGLTEFANPRNAAAGSLRQLDVGVTASRPL
RFFAYAWGEMPVLPAPTQMGVVETFRRWGFRTNPLMRRCGSVEELIAQYRLIESQRATLG
YDIDGVVYKVDDLALQARLGFVSRAPRWAIAHKFPAELATTVLEAIDIQVGRTGALSPVA
RLKPVTVGGVVVTNATLHNEDYIRGFDSKGLPIRDGTDIRIGDTVTVKRAGDVIPRVEAV
DLSKRPADSKPYEFPTLCPACGSHATRELNPRTGKEDAVRRCTGGLICPAQSVERLKHFV
SRDAMDIDGLGDKQIEFFHSDPELPVKEPADIFTLAQRDAANLKKLKDKEGFGAVSAKKL
FDAIEDRRRPPLNRFIFGLGIRHIGETTARLLARHYGSFEALRAAGIAAADETSPERQEL
DAIDSVGPTVVEALIEFFGEPHNEQLLDRLLVEVAPQPLEAVASASPVAGKIVVFTGALE
RMTRDEAKAMAERLGAKVAGSVSSKTDLLVAGPGAGSKLKDAAKHGVEVIDEAGWFDLVG
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgccaaagacaccgccctctccgaaacgtcgattgccgagctgacgccgcgc
aaggcgaaggccgagcacaagcagctcgccgcgcaggtgcaggcggcgaacgacgcctat
ttccaggaagaccagccgatcatggacgacgcggcctatgacgcgaagcgtcggcgactg
gtcgcgctcgaggaggcctttcccgagctgaaggagaccggcggcgtcagcggcaaggtc
ggcgccaagccttccggcaagttcgccaagatccggcatcgcgtgccgatgctatcgctc
gacaacgccttctcggacgaggccgtcgccgagttcgtcggccgggtctaccgcttcctc
ggccgcaaggaggaggacggcatcgacttcaccgccgagcccaagatcgacggtctgtcg
ctttcgctgcgctacgagaagggcgagctggtcgcggcggcgacgcgcggcgacggcgag
gagggcgaggacgtcaccgtcaacgcccgcaccatctctgaaatccccgcgacgctggcc
gggccggatgttccggagatcgcggaggtgcggggcgaggtctatctcggccatgccgat
ttcgcagggatcaacgaacgccagcgcgagaaggggctgaccgaattcgccaatccgcgc
aacgccgcggccggctcgctgcgccagctcgacgtaggcgtcaccgcctcccgtcccttg
cgcttcttcgcttatgcctggggtgagatgccggtgctgccggcgccgacgcagatgggc
gtggtcgagaccttcaggcgctggggcttccgcaccaacccgctgatgcggcgctgcggg
agcgtggaggagctgatcgcccagtatcggctgatcgagagccagcgcgccacgctcggc
tacgatatcgatggcgtggtctacaaggtcgatgatctcgcgctgcaggcgcggctcggc
ttcgtctcgcgggcgccgcgctgggcgatcgcccataaattcccggccgagctggcgacg
accgttctggaagccatcgacatccaggtcggccgcacgggtgcgctctcgccggtggcg
cggctgaagccggtgacggtcggcggcgtcgtggtgaccaatgcgacgctgcacaacgag
gattatatccgcggcttcgattccaaggggctgccgatccgcgacggcaccgacatccgc
atcggcgacacggtgacggtgaagcgcgcgggcgacgtcatcccgcgcgtcgaggcggtc
gatctgtcgaaacggcctgcggattcgaagccctatgaattcccgacgctctgcccggcc
tgcggcagccatgcgacgcgcgagctcaatccgcgcaccggcaaggaggatgcagtgcgc
cgctgcaccggcggcctgatctgcccggcgcaatcggtcgagcggctgaagcatttcgtc
tcgcgcgatgccatggacatcgacggcctcggcgacaagcagatcgagttcttccacagc
gatcccgagttgcccgtgaaggagccggcggacatcttcacgctggcccagcgcgatgcg
gccaatctcaagaagctcaaggacaaggagggcttcggtgccgtcagcgcgaagaagctg
ttcgacgcgatcgaggatcggcgccggccgccgctcaaccgcttcatcttcgggctcggc
atccgccatatcggcgagacgaccgcacggcttctggcgcgccactacggctcgttcgag
gcgctgcgggcggcgggcatcgctgccgccgacgagacctcgcccgagcggcaggaactc
gatgccatcgacagcgtcggaccgaccgtggtcgaggcgctgatcgagttcttcggcgag
ccgcataacgaacagttgctcgaccggctgctggtcgaggttgcgccccagccgctggag
gcggtggcctcggccagccccgtcgccggcaagatcgttgtgttcaccggcgcgctggag
cggatgacccgtgacgaggccaaggcgatggccgagcggcttggtgccaaggtcgcgggc
tcggtctcgtcgaagacggacctgctcgtcgccgggccgggcgccggctccaagctcaag
gatgccgccaagcacggcgtcgaggtgatcgacgaggccggctggttcgatctggtgggt
gggtaa
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integrated database retrieval system
