Bordetella sp. H567: AKI39_17840
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Entry
AKI39_17840 CDS
T04979
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
boh
Bordetella sp. H567
Pathway
boh03030
DNA replication
boh03410
Base excision repair
boh03420
Nucleotide excision repair
boh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
boh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AKI39_17840 (ligA)
03410 Base excision repair
AKI39_17840 (ligA)
03420 Nucleotide excision repair
AKI39_17840 (ligA)
03430 Mismatch repair
AKI39_17840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
boh03032
]
AKI39_17840 (ligA)
03400 DNA repair and recombination proteins [BR:
boh03400
]
AKI39_17840 (ligA)
Enzymes [BR:
boh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AKI39_17840 (ligA)
DNA replication proteins [BR:
boh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AKI39_17840 (ligA)
DNA repair and recombination proteins [BR:
boh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AKI39_17840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AKI39_17840 (ligA)
MMR (mismatch excision repair)
DNA ligase
AKI39_17840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AKI39_17840 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AOB32174
LinkDB
All DBs
Position
complement(3973852..3975966)
Genome browser
AA seq
704 aa
AA seq
DB search
MKAGNKATDAQEEIAHLRVEIEQHNYRYYVEDAPSISDAEYDALMRRLVALEEAHPELVT
PESPTQRVGAAPLAAFGAVTHAVPMLSLGNAFDEDEVRAFDKRVTDTLRASGQLGPASQP
DYFCELKLDGLAISLRYENGKLTQAATRGDGQTGEDVTANIRTIRSIPLQLKAGAPRVLE
VRGEVLMNRREFERLNASQAERGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYGWGE
VHGLAGRQPELFDEPAPGVRQAATLPRESHSAMLDWLAELGLPINTAHNQKAKGADGLLA
FYAHVAKLRPTLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKYPAEEATTTLLDIE
VQVGRTGAITPVARLQPIFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVV
GPVLEKRPAAAASFDMKQKYPVCPVCGSAIERPEGEAIARCTGGLFCAAQRKQTLLHAAG
RKALDIEGLGEKLVDQLVDRDRIKSLADIYGLTAEELAGYERMGTKSAENLVRAIDKART
PTLGRLLFALGIRHVGETTARDVARHFGGMDAIMDAGEAQLLEVSDVGPAVAASIHRFFA
EPHNRDIVEALKRQGVHPVAEAAARSGGLSGKTFVLTGTLPTMTREEATSHILAAGGKVS
GSVSRKTAYVVAGADAGSKLANAEKLGVPILDEEGLKQLLGLRE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggctggcaacaaggccaccgacgcgcaggaagaaatcgcccacctgcgcgtcgaa
atcgagcagcacaactaccggtactacgtcgaagacgcgcccagcatttccgacgccgaa
tacgatgccttgatgcgcagactcgtggcgctcgaggaagcccatcccgagctcgtgacg
ccggagtcgcccacccagcgcgtgggtgccgccccgctggcggcctttggcgccgtcacc
catgcggtgcccatgctgtcgttgggcaatgctttcgacgaagacgaagtccgggccttc
gataagcgtgtcacggacacgctgcgtgcgtccggccaactgggtccggccagccaaccg
gattatttctgcgaactgaagctggacggcctggccatcagcctgcgctatgaaaacggc
aagctgacgcaggccgcgacacgcggcgacgggcagaccggcgaggacgtgacggccaat
atccgtaccatacgctcgattccgctgcagctgaaggccggcgccccccgcgtgctggaa
gtgcgcggcgaagtgctgatgaatcgccgcgaattcgagcgcttgaatgcatcgcaagcc
gagcggggcgaaaaagtcttcgtcaatccgcgcaatgccgccgccggcagcctgcggcaa
ctggacccgcgcatcacggcgcagcgcccgctgcgtttcttcgcctatggatggggcgaa
gtccatgggcttgccggtcgccagccggagctcttcgacgagcccgcgcccggcgtgcgc
caggccgccacgctgccgcgcgagtcgcacagcgccatgctggactggctggccgaactg
ggcctgccgatcaacaccgcgcacaaccagaaggccaagggcgctgacgggctgctcgct
ttctatgcgcatgtcgcaaagctgcggccgacgctgccctacgacatcgatggcgtggtc
tacaaggtcgattccctgccggcgcagaaagtactgggctttgtcgcgcgcgcgccgcgc
ttcgcgctggcacacaaatatcccgccgaggaagccaccaccacgctgctggacatcgaa
gtccaggtcggccgcaccggcgccattacgccggtggcgcgcctgcagcccatttttgtc
ggcggggtgaccgtcaccaacgccacactgcataacgaagacgagatccgccgcaaggat
gtgcggatcggcgataccgtcatcgtgcggcgcgccggcgacgtgattcccgaagtcgtc
ggcccggtgctggaaaagcggcccgcggcggcggcgtcgttcgacatgaagcagaagtac
cccgtgtgcccggtgtgcggctccgcgatcgagcggccggagggcgaggccatcgcccgc
tgcaccggtgggctgttctgcgccgcacagcgcaagcagacgctgctgcacgcggcgggc
cgcaaggcgctggatatcgaggggctgggtgagaagctggtcgatcaactggtggaccgc
gatcgcatcaagtccttggcggatatctacggcctgaccgccgaggaactggccggctat
gagcgtatgggaacgaaatcggccgagaacctggtgcgcgccatcgacaaggcgcgcacg
cccacgctgggccggctgctgttcgcgctgggcatccgtcacgtcggcgaaaccacggcg
cgcgacgtggcccggcacttcggcggcatggacgccatcatggacgccggggaagcgcag
ctgctggaggtttccgatgtggggccggcggtcgcggcctcgatacaccgcttttttgcc
gagccgcataaccgcgatatcgtggaagcgctgaagcggcagggtgtacatccggtagcg
gaggccgccgcgcgcagcggtggcctgtcgggcaagactttcgtcctgaccggtacgctg
ccgaccatgacgcgcgaagaggcaaccagccatatcctggccgcgggcggtaaggtcagc
ggctcggtatccaggaaaaccgcgtatgtggtggcgggcgccgacgccggcagcaagctg
gccaatgccgagaaactgggcgtgcccatactggatgaagagggcctgaagcagttgctg
gggttgcgcgaatag
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