Bordetella sp. J329: CBF45_14000
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Entry
CBF45_14000 CDS
T05850
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
boj
Bordetella sp. J329
Pathway
boj03030
DNA replication
boj03410
Base excision repair
boj03420
Nucleotide excision repair
boj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
boj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CBF45_14000 (ligA)
03410 Base excision repair
CBF45_14000 (ligA)
03420 Nucleotide excision repair
CBF45_14000 (ligA)
03430 Mismatch repair
CBF45_14000 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
boj03032
]
CBF45_14000 (ligA)
03400 DNA repair and recombination proteins [BR:
boj03400
]
CBF45_14000 (ligA)
Enzymes [BR:
boj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CBF45_14000 (ligA)
DNA replication proteins [BR:
boj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CBF45_14000 (ligA)
DNA repair and recombination proteins [BR:
boj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CBF45_14000 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBF45_14000 (ligA)
MMR (mismatch excision repair)
DNA ligase
CBF45_14000 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBF45_14000 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DUF2116
Motif
Other DBs
NCBI-ProteinID:
AZV94697
LinkDB
All DBs
Position
complement(3154217..3156349)
Genome browser
AA seq
710 aa
AA seq
DB search
MSSGLTLEAARERAGALRREIEGHNHRYYVLDDPSVPDAVYDGQMRELEALEAEWEELRT
PDSPTQRVGATPSSAFGSVRHAVPMLSLSNAFNQEEVEAFDRRVTDTLRDAGQLGLAEAA
EYFCEMKFDGLAISLRYENGVLVQAATRGDGYEGEDVTHNVRTIRAIPLRLQASGRAVPE
VLEVRGEVLMFREDFERLNLAQQARNEKVFVNPRNAAAGSLRQLDSSITAKRNLRFYAYG
WGEYRAGQDGVAPAGGSGDLFAAAPAEAAAQDAALPASTHSGMLAWLAELGLPVNSKYNR
VARGVDGLMAFYNEVGATRAGLKYDIDGVVYKVDSLRSQQTLGFVARAPRFALAHKFPAE
EAQTRLLDIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVMIGDTVIVR
RAGDVIPEVVRPLPELRPADARAFVMPMHCPICGSAIERPEDETIARCSGGLFCAAQRKQ
SLWHAASRKALDIGGLGEKLIEQLVDDGRVHSLADLFDLRAELLASYDRMGAKSAANLVA
AIEAARRPTLGRLIYALGIRHVGETTARDLARHFGSMEALADADLEALQRAPDVGPVVAA
SVRRFFDEPHNREVLEALKRHGVEPQPEAAPASTGLTGKTFVLTGTFPRWTREEASQRII
AAGGKVSGSVSRKTSFVVAGVEAGSKLTKARELGVTVLDEDELRAMLGEP
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgagttcaggtttgacgttggaagcggcccgggaacgggccggggcattgcgcagggaa
attgaaggccataaccaccggtattacgtgctggatgatcccagtgtgccggacgccgtc
tatgacggccagatgcgcgagctggaagcgctggaggccgagtgggaggaattgcgtacg
ccggattccccgacgcagcgtgtcggggccacgccatcgtcggcgttcggcagcgtgcgc
catgccgtccccatgttgtcgctgagcaatgccttcaatcaggaagaagtcgaagctttt
gaccgtcgtgtcaccgataccctgcgtgatgcaggccagttgggactggcggaagcagcg
gaatatttctgcgagatgaagttcgacgggctggccatcagcttgcgctatgaaaacggc
gtgctggtgcaggccgcgacgcgcggcgacggttatgaaggcgaggatgtcacgcataac
gttcgtaccatccgtgcgattcccttgcgtttgcaggcatctggccgggccgtgcccgag
gtgttggaagtgcgtggcgaggtcctgatgttccgggaagatttcgagcgcctgaatctg
gcccagcaggcccgtaacgagaaagtcttcgtcaatccgcgcaatgcggcggccggcagc
ctgcggcagctggattccagtatcaccgccaagcgcaatctgcgtttctacgcctacgga
tggggagaataccgcgcaggccaggatggtgtggcgccggcaggtggcagcggcgatcta
tttgctgctgcgcctgcggaggctgcggcccaagatgcggccttgcccgccagcacgcat
agcggcatgctggcctggctggctgaactgggtttgccggtcaacagcaagtacaaccgg
gttgcacgcggtgtcgatgggctgatggccttctataacgaggtcggcgcgacgcgtgcc
gggctcaagtacgacatcgacggcgtggtctacaaggtggatagcctgcgtagccagcag
acgctggggttcgtggcgcgcgcgccgcgttttgcactggcccataaatttccggccgaa
gaggcgcagacccgcttgctggatatcgaggtacaggtgggccgtactggcgccatcacg
ccagtggcgcgcctggcgccggtattcgtcggtggcgtgacggtgaccaatgccacgctg
cacaacgaagatgaaatccgccgcaaggatgtgatgattggcgatacggtgatcgtgcgc
cgcgcaggggacgtgattcccgaagtggtgcgcccgttgccagagctgcgaccggccgat
gcgcgagcgtttgtcatgccgatgcattgtccgatctgcggttcggccattgagcggccc
gaggatgaaaccatcgcacgctgttccggcggcctgttctgcgcagcgcagcgcaagcag
tccctctggcacgctgccagccgcaaggcgctggatatcggcgggttgggagagaagctg
atagagcagctggtggacgatggccgggtgcattccctggcggatctgttcgacttgcgt
gccgagctgctggcgtcctatgaccgcatgggagcgaagtcggcggccaatctggtcgct
gccatagaggctgcgcggcgccccacgctgggccggctgatttatgcgctgggtatccgc
catgtgggtgaaaccacggcgcgggacctggcaaggcatttcggcagcatggaagccctg
gccgatgccgatctcgaggccttgcagcgtgcacccgacgtcggtccggtggttgcggca
tccgtgcggcgtttcttcgacgaaccgcataaccgcgaagtgcttgaagcgctcaaacgt
catggcgtcgagccgcagccggaagcggcgccggcttcgaccggcttgactggcaagaca
ttcgtgctgaccggcacgtttccacgctggacacgcgaggaagcctcgcaacgcattatc
gcggctggcggcaaggtgagcggctcggtgtcgcgcaagacttcgttcgtggtggccggc
gtggaagcgggcagcaagttgaccaaggccagggaactgggggtcacggtgctggacgaa
gacgagttgcgtgccatgctgggagagccctga
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