Burkholderia oklahomensis EO147: DM82_1748
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Entry
DM82_1748 CDS
T03284
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bok
Burkholderia oklahomensis EO147
Pathway
bok03030
DNA replication
bok03410
Base excision repair
bok03420
Nucleotide excision repair
bok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DM82_1748 (ligA)
03410 Base excision repair
DM82_1748 (ligA)
03420 Nucleotide excision repair
DM82_1748 (ligA)
03430 Mismatch repair
DM82_1748 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bok03032
]
DM82_1748 (ligA)
03400 DNA repair and recombination proteins [BR:
bok03400
]
DM82_1748 (ligA)
Enzymes [BR:
bok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DM82_1748 (ligA)
DNA replication proteins [BR:
bok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DM82_1748 (ligA)
DNA repair and recombination proteins [BR:
bok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DM82_1748 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DM82_1748 (ligA)
MMR (mismatch excision repair)
DNA ligase
DM82_1748 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DM82_1748 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
MctB
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AIO65769
UniProt:
A0AAI8B5C3
LinkDB
All DBs
Position
1:complement(2011478..2013553)
Genome browser
AA seq
691 aa
AA seq
DB search
MARSPVEPPASQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPD
LVTPESPTQRVGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGT
VTDPVEYACELKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKH
VPRVLDVRGEVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFF
AYGIGVLDGVDMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAREFV
MPTACPECGSGIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
EQNLVRTPADLFNLGFSTLVELDRFAEKSAQNLIDSLDKAKHTTLARFIYALGIRHVGES
TAKDLAKHFGSLDPIMDASIEALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVT
WPEGPPAPRAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
DAGSKLAKAEELGIPVLDEEGMHKLLEGHAR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgatccccagttgaaccgcccgccagccagccggccaagcgcgccgcgtggctg
cgcgccgagctcgagcgggcgaactacgcctattacgtgctcgaccagccggagctgccc
gacgccgagtacgatcgcctcttcgtcgagctgcagcaagtcgaggccgagcaccccgat
ctcgtcacgcccgaatcgccgacgcagcgggtcggcggcgaagtcgcgagcggcttcacg
cccgtcgtgcacgacacgccgatgctctcgctcaacaacggcttttccgacgaagacgtc
gtcgcgttcgacaagcgcgtggccgacggcctcgacaaggcgaccgacctcgccggcacc
gtgaccgatcccgtcgaatacgcgtgcgagctgaagttcgacggcctcgcgatctcgctg
cgctacgaggacggccggttcgtgcaggcgtcgacgcgcggcgacggcacgacgggcgag
gacgtcacccggaacatccgcacggtccgttcggtcccgctgaagctgaagggcaagcac
gtgccgcgcgtgctcgacgtgcgcggcgaagtgctgatgttcaagcgcgatttcgcgcgc
ctgaacgaacgtcagcgcgcggcgggccagcgcgagttcgcgaacccgcgcaacgcggcg
gcggggagcctccggcagctcgattcgaagatcaccgcgtcgcggccgctgtcgttcttc
gcttacgggatcggcgtgctcgacggcgtcgacatgccggacacccacggcggcctcctc
gactggtacgagacgctcgggctgccggtgaaccgcgagcgcgcggtcgtgcgcggcgcg
gcgggcctcctcgacttcttccacgcggtcggcgagcggcgcgagtcgctgccgtacgac
atcgacggcgtcgtctacaaggtgaaccgtcgcgacgagcaggagcggctcggcttcgtg
tcgcgcgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaggcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcacgggcgcgatcacgccggtcgcgcgcctc
gagcccgtgttcgtcggcggcgcgaccgtcacgaacgcgacgctgcacaacgaagacgag
gtgcgccgcaaggacatccggatcggcgacacggtgatcgtgcgccgcgcgggcgacgtg
attcccgaggtggtgtcggccgtgctcgaccgccgaccggcggatgcgcgcgaattcgtg
atgccgacggcatgccccgaatgcggatcggggatcgagcggctgccggacgaggcgatc
gcgcgctgcacgggcgggctcttctgtcccgcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgaccagctcgtc
gagcagaacctcgtgcgcacgccggcggacctgttcaacctcggcttctcgacgctcgtc
gagctcgaccgcttcgcggagaagtccgcgcagaacctgatcgattcgctcgacaaggcg
aagcacacgacgctcgcgcgcttcatctacgcgctcgggatccggcacgtcggcgagtcg
acggcgaaggatctcgcgaagcatttcggctcgctcgatccgatcatggacgcgtcgatc
gaagcgttgctcgaggtcaacgacgtcgggccgatcgtcgccgaatcgatccatcagttc
ttcgccgaggaacacaatcgcacggtgatcgagcaactgcgcgcgccgggccgcgtcacg
tggcccgaagggccgcccgcgccgcgcgcgccgcaaggcgtgctcgcgggcaagaccgtc
gtgctgacgggcacgctgccgacgctcacgcgcgacgcggcgaaggagatgctcgaggcg
gcgggcgcgaaggtcgcgggctcggtgtcgaagaaaaccgattacgtcgttgccggcgcc
gatgcgggcagcaagctcgcgaaggccgaggaactcggcattccggtgctggacgaagag
ggcatgcacaaacttctggagggccacgcgcgatga
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