Aristophania vespae: GT348_05345
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Entry
GT348_05345 CDS
T06386
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bomb
Aristophania vespae
Pathway
bomb03030
DNA replication
bomb03410
Base excision repair
bomb03420
Nucleotide excision repair
bomb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bomb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GT348_05345 (ligA)
03410 Base excision repair
GT348_05345 (ligA)
03420 Nucleotide excision repair
GT348_05345 (ligA)
03430 Mismatch repair
GT348_05345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bomb03032
]
GT348_05345 (ligA)
03400 DNA repair and recombination proteins [BR:
bomb03400
]
GT348_05345 (ligA)
Enzymes [BR:
bomb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GT348_05345 (ligA)
DNA replication proteins [BR:
bomb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GT348_05345 (ligA)
DNA repair and recombination proteins [BR:
bomb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GT348_05345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GT348_05345 (ligA)
MMR (mismatch excision repair)
DNA ligase
GT348_05345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GT348_05345 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
RUBY_RBDX
Zn_ribbon_NUD
Nlig-Ia
BRCT_2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QHI95756
UniProt:
A0A6P1NBM2
LinkDB
All DBs
Position
1191776..1193863
Genome browser
AA seq
695 aa
AA seq
DB search
MSSKLTPAELYNNLQEKIARWDEAYHGHDEPEVSDAEYDHARLELSRLERLHPELKNQNN
PSERVGAKPNPAFGKVKHRAPMLSLGNVFAEDEFEQFVSRAGNFLGLSPEDTENLCFVAE
PKIDGLSINLTYENGQFTAGTTRGDGLVGEDVTNNIRTLKTLPLHLGKNAPEFIEIRGEV
FMEKSRFFELNAEQEKRGEKVFANPRNAAAGSLRQLDSNITAKRPLGLFVYGLGHSSHPV
AKTHSEFLDQLREWGFDVNPLSQRIDHARDIPAYVEKLARERSGLDYDIDGIVFKINDIS
LQNRLGFVGRAPRWATAWKFPAEQAITHLKDIEIQVGRTGALTPVAHLEPVNVGGVIVSR
ATLHNEDEINRLDVRVGDLVRLQRAGDVIPQILSVISPDDTNELPSRGSKFIFPDHCPVC
GAYAERIQGEAVRRCTGGLTCEAQTVERLIHFVSRNAFDIDGLGQRSIRAFYDLGFIKQP
GDIFRLSNHKEELVKLEGWGPQSVDNLLSAIEERRTIPLSRFIYGLGIRRIGERNAALLA
RHYGSFENWLNAMRALNNDEKEEYETLSAIMGIGPAIADELTAFFHEPHNQTVIDDLASQ
LTIEDASSPIASGPEGHKLAGETLVFTGSLTTMSRSEAKAIAERLGAQVTETVSKKTSFV
ILGEKAGSKAKKAQELGIRTISEDEWIKLANSETQ
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgagttctaaacttacaccagctgaattatataataatcttcaggagaaaatagcccga
tgggacgaggcctatcacggtcacgatgagccagaagtttcagatgcagaatatgaccat
gcccgtcttgaattatcgcgcttggagcgccttcatcctgaattaaaaaatcaaaataac
ccaagcgagcgtgttggtgccaaaccaaaccctgcttttggtaaagtgaaacaccgcgcc
ccaatgctctctttaggtaatgtgtttgctgaagacgaatttgagcagtttgtaagccgc
gccggaaattttcttggtttaagcccagaggatacggaaaatctttgctttgtggcagaa
cctaaaattgatggtctttctatcaatctaacttatgaaaatggtcaatttacagccggt
acaacacgcggtgatggtttagttggcgaagacgttacgaacaatattcgtacattaaaa
acactcccccttcacttaggcaaaaatgccccagaatttattgaaattcgtggtgaagtt
tttatggaaaaatcacgtttttttgagcttaatgccgagcaggaaaaacgtggtgaaaag
gtttttgccaatcctcgcaatgccgcagcaggctctttacggcaattagactctaatatt
acagcaaaacgtcctttgggcctgtttgtctatggtcttggtcatagttcgcaccctgta
gccaaaacacatagcgaatttctagatcaattaagagaatgggggtttgatgttaaccct
ttatctcaacgtattgatcatgctcgcgatattcctgcttatgttgaaaaactagcaagg
gaacgctccggacttgattatgacattgatggtattgtctttaaaattaatgacatatca
ttgcaaaatcggcttggctttgttggacgcgccccgcgctgggccactgcatggaaattc
cctgctgaacaagcaatcacacatctaaaagatattgaaatacaggtaggtcgcacgggc
gcccttacccctgtagctcatttagaacctgtcaatgttggcggggtcattgtatccaga
gccacacttcataatgaagatgagatcaatcgtttagatgtacgtgttggcgatcttgta
aggcttcagcgtgcaggggacgttattcctcagattttaagtgtcatttcacctgatgac
acaaatgagcttccctctcgtggttctaaatttatctttccagatcactgccctgtctgc
ggcgcctatgcagaacgtatccagggagaagctgtaagacgctgcacaggtggtctcacc
tgtgaggcacaaacagtagaacgccttattcactttgtctcacgtaacgcgtttgacatt
gatggattaggacagcgcagtatcagagctttttatgatcttggatttattaaacaacca
ggagatattttccgcctttcaaaccacaaagaagagcttgtaaaattagaaggctggggc
ccgcaatcagttgataacctcttatcagccatagaagaacgacggactatacctctctcc
cgcttcatttatggattgggcattcggcgtataggtgaacgcaatgccgcacttttagcg
cgccattatggttcttttgaaaattggctaaatgccatgcgtgccttaaataatgatgaa
aaagaagaatatgaaactttgagcgccattatggggattggacctgcaattgccgatgaa
ttgaccgctttttttcacgagccccataatcaaactgttattgatgatcttgcgtctcaa
ttaacaattgaagatgcaagctctcctatagcttcagggccagaaggccataaacttgca
ggtgaaacattggtgtttaccgggtcactaacgacaatgtcacgctctgaagccaaagca
atagctgagcgtttaggggctcaggttactgaaacagtttctaaaaagactagttttgta
attttaggtgaaaaagctggctctaaagctaaaaaagcgcaagagttaggaatccgcact
attagtgaagatgaatggattaagctcgccaatagtgaaactcaataa
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