Borrelia sp. HM: BKFM_00552
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Entry
BKFM_00552 CDS
T08772
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
boq
Borrelia sp. HM
Pathway
boq03030
DNA replication
boq03410
Base excision repair
boq03420
Nucleotide excision repair
boq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
boq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BKFM_00552 (ligA)
03410 Base excision repair
BKFM_00552 (ligA)
03420 Nucleotide excision repair
BKFM_00552 (ligA)
03430 Mismatch repair
BKFM_00552 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
boq03032
]
BKFM_00552 (ligA)
03400 DNA repair and recombination proteins [BR:
boq03400
]
BKFM_00552 (ligA)
Enzymes [BR:
boq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BKFM_00552 (ligA)
DNA replication proteins [BR:
boq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BKFM_00552 (ligA)
DNA repair and recombination proteins [BR:
boq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BKFM_00552 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BKFM_00552 (ligA)
MMR (mismatch excision repair)
DNA ligase
BKFM_00552 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BKFM_00552 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
PTCB-BRCT
HHH_2
HHH
Motif
Other DBs
NCBI-ProteinID:
BCR21972
LinkDB
All DBs
Position
570480..572489
Genome browser
AA seq
669 aa
AA seq
DB search
MSKDIKAEILNLKNIIRKWNKEYYIDSSPSVDDLVYDKALLRLQYLEKKYPEYKTLDSPT
LRFGSDLLNSFEEVKHDFPILSLDKAYDIKELLLWVKKIQLEGSKVGFCSAISVEPKIDG
CSIVLYYKDGILQRALTRGDGRVGNDVTENVRTIKNVPLSIDEKVELALRGEIYITKANF
LKINQMLKTPYVNARNLVSGILRRINSSEVANFPLDIFVYDILYSCLKLNLGHDAFDKLK
KFGFKVNPYCAFFDGKNLEEDIISHVKKIEGQRNSFEYEIDGIVLKVDNFSLREILGYTA
HHPKWSIAYKFESFTGLSRVVDIFVQVGRSGKITPVAHVDKVLIAGAFITNASLHNQDYI
DFLGLNIGDIVSISRRGDVIPAVELVVEKLTVGNFKIPDSCPSCQRTLIKEGSHLFCINK
LCACRIIEQIKYFCSKKCMNIVGLSGKTIEFLCKMDFISSEIELYTFDFDRLINLRGFDI
KRINNLKRSIEESKGRPFRKLLLSMGIKELGANTILMLLNNNLNSFDIISTLCKNREAAL
EELLKIKGIGRNIALNIIEAFNDKIIIDKFNFLKKLGFAMKEDNASSSVDTSFLMGKKFC
ITGSFGDYTRHILVERITSKGATFKDSVTKSLDFLLVGDNPGLKVSKANNLGIKIFTLSD
IISFIDLND
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagatattaaagctgaaattttaaatttgaaaaatatcattagaaaatggaac
aaagagtattatattgattcttcacctagtgtggatgatttagtttatgataaagctctt
ttacgactgcaatatttagaaaaaaagtatcctgaatataaaacattagattctccaacc
cttagatttgggagtgatctcttaaatagttttgaagaagtaaagcatgattttcctata
ttaagtttggataaagcttatgatattaaagaattattattgtgggttaaaaaaatacag
ttagagggttctaaagtgggattttgtagtgccatttcagttgaacccaaaattgatgga
tgttcaattgttctttattataaagatggcatacttcaaagagctttaactaggggagat
gggagagtgggaaatgatgttactgagaatgtacgaacaattaaaaatgttcctttaagt
attgatgaaaaagttgaattagctttgagaggtgaaatttatattaccaaggcaaatttt
ttaaagataaatcagatgttaaaaactccttatgttaatgctagaaatttagtctcgggt
atactgaggagaataaatagtagtgaagttgctaattttcctttagatatttttgtatat
gatattttatattcttgcctgaaactgaatttgggtcatgatgcgtttgataaacttaaa
aaatttggatttaaagttaatccttactgtgcattttttgatggtaaaaatttagaagaa
gatattattagtcatgtaaagaagatagaaggtcaaagaaattcttttgagtatgaaatt
gatggtattgtgctaaaagttgataatttttctttaagagagatcttaggatatactgct
catcatcccaagtggtcaatagcttataaatttgaatcttttacaggtttaagtagagtt
gttgatatatttgttcaggttggtcgtagtggaaaaattactcctgttgcacatgtagat
aaagtgcttattgctggggcttttattactaatgcaagtttgcataatcaagattatata
gattttcttggtttaaatattggagatattgtttcaatttcaagacgtggagatgttatt
ccagctgttgaattggtggtagaaaagcttacggtaggtaattttaaaattcctgatagt
tgtccttcatgtcaaaggactttgataaaagaaggatcacatcttttttgtataaataaa
ttgtgtgcttgtagaataattgagcagatcaagtatttttgtagtaagaagtgtatgaat
attgtgggactttcagggaaaacaattgagttcctttgtaaaatggattttatatcttca
gaaattgagctttacacttttgattttgataggcttattaatctaagaggttttgatatt
aaaagaattaataatttaaaacgttcaattgaagagagtaaaggtcgaccatttagaaaa
ttacttcttagcatgggcattaaagaacttggagcaaatacaatattaatgctattgaat
aacaacttaaactcatttgatataattagtactttgtgcaaaaatagagaggctgctctt
gaagaacttttaaagattaaggggattgggcgaaatatagctttaaatattattgaggca
tttaatgataagattattattgataagttcaattttttaaaaaaattagggtttgctatg
aaagaggataatgctagttcttctgtagatacttcttttttaatgggcaaaaaattttgc
attacaggttcttttggggattatactagacatattcttgttgaaagaattactagtaaa
ggtgctacttttaaagattcagttactaagagtttagattttttgcttgttggagataat
cctgggttaaaagtgtctaaagccaataatttaggcattaaaatttttactctttctgac
ataataagttttatagatttgaatgattaa
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