Bipolaris oryzae: COCMIDRAFT_40176
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Entry
COCMIDRAFT_40176 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bor
Bipolaris oryzae
Pathway
bor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
COCMIDRAFT_40176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_40176
Enzymes [BR:
bor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
COCMIDRAFT_40176
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
COCMIDRAFT_40176
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DUF4941
Motif
Other DBs
NCBI-GeneID:
19123829
NCBI-ProteinID:
XP_007691802
JGI:
Cocmi1_40176
UniProt:
W6YVX4
LinkDB
All DBs
Position
Unknown
AA seq
818 aa
AA seq
DB search
MSLTFNAICSLLQDIEKISTNEPRLPSRQEQEAIQQVVLDWFQNQRAALDDADTDGGAVL
SILLPHQRKDRVYGLQAPLLAKKLSRLLAFSHGQRTLFESWKTGNYGDLGAYVERAMKPW
NGTFSIKPDITVKRVNCLLVQLAANCRFSDERTRRVRDPGFDINNELKSIITRLESWEAK
WLVRLLLRDYCTIELDERVVTRHYHFLLPELLAFQNDYEAAFDVLKGDLGSYPAVPESWE
EEPMRVEAAKRLKARVGVKIGRPTFLKAWSFSNCFKLVDDGVWAAEVKYDGEYCEIHIDL
ENEDSSLRIFSKNGKDATADRTALHSTIRNALRIGQPDAMFKKNCIVTGEMVVYSDKEKR
ILPFSKIRKYVTRSGSFRVTLNSSAVHQQEYLMIVFFDVLTVDDEPILCHCLEDRRKILH
KLIHGIPGRSMLSEWTLLDFKTGNGITDLKQTFARTLANRQEGLVLKPLQAPYLPVLSEQ
GRCQTGFFIKLKKDYLGDMGGERDMGDFAVIGASFDAQAATKTNLKPLHWSHFYLGCCVN
RDAVLLTGAKARFTVVASLSVEKCIPRSDAQYLNIQGYIRQTTLHERRGGATAEFDIINF
RDYYYHGRRMTVAFRNPLLPHASFEMLRHPRVTKVHHDRTWEDAVTMQDLERMAKEKFSV
PDADKLDGHARDVALLVEKYTREMNGSHNAAATERITGKTTQRTSSCLLQGTPQSPLTEA
ESPVTSGQGSTIEKVTALAPPEATSSIVSGSSVPSGTVTNKRWSLVEPISPPRIKRRKSR
CPLQVSDGNQQVGSLDLDSHEKNDGIYKEEGAEKENRL
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcaccttcaatgctatctgtagcctgttgcaagacattgagaagatctccaca
aatgaaccgcgactgccttcaaggcaggaacaagaggccatccaacaggttgttttggac
tggttccaaaaccaaagagctgcccttgacgatgcagatacggatggcggagctgtgctg
tccatcttacttccgcaccaaaggaaggaccgcgtgtacggtttgcaagcgcccttgctt
gcaaagaaactctcacgtctgctcgcctttagtcatgggcagcgcacactatttgaaagc
tggaagacgggcaactatggcgatctgggtgcatacgtcgaacgcgccatgaagccttgg
aatggtaccttctccatcaaaccagacatcacagtcaaaagagtcaactgcctgttggta
caactggctgccaactgtagattctctgacgaaagaaccagaagagttcgcgatccaggg
ttcgacatcaacaatgaactcaaaagtatcatcacaaggcttgagtcttgggaagcaaaa
tggctagtccgccttctacttcgagattactgcactatcgaattggatgaaagagttgta
acgcggcactatcactttctgttaccggagctattggcgtttcagaacgactacgaggca
gcctttgatgtactcaaaggtgaccttggttcttatccggccgtacctgagtcgtgggaa
gaggagcccatgcgtgttgaggcagcgaaaagactcaaggctagggtcggcgtcaagatt
gggcgaccgaccttcctaaaagcgtggtcgttcagcaactgttttaagcttgttgacgat
ggcgtctgggcagccgaagtcaaatacgacggcgaatactgcgagatccacattgatttg
gaaaatgaagatagtagcctgcgaatcttctccaagaacggcaaagatgcaactgcagat
cgcactgctctacacagcacaattcgcaacgctcttcgtataggccagccagacgccatg
ttcaaaaagaactgcatcgtcactggcgaaatggtggtatacagcgacaaggagaagaga
atactaccattctcgaagattcgcaagtatgtcacgcgctcaggatccttcagagtcacg
ttgaacagctctgcagtgcatcaacaggaatatctcatgattgtcttctttgatgttttg
accgtagatgacgagcccattttgtgtcactgcctcgaggaccgccgcaaaattcttcat
aaacttatccatggcataccaggacggtctatgctctcagagtggaccttgttggatttt
aagacagggaatggtataacggaccttaaacagacattcgcccgcaccctagccaatcgc
caagaaggattggtactgaaaccgttgcaagcgccctatctgcccgtgctatctgagcaa
ggccgctgtcaaacaggtttcttcatcaagctcaagaaggattacttaggcgacatgggc
ggtgagcgagacatgggcgacttcgctgtcattggagccagttttgacgcgcaggctgca
acaaagacgaatctaaagcctctacactggtcacacttttacctgggatgctgcgtcaac
agggatgcggtcctactgacaggggccaaggcacggttcacagtcgtcgctagtttgagc
gttgaaaagtgtatcccgaggtctgacgcacagtatctaaatatccagggctatattcgt
cagaccactttgcatgagcgtcgtggtggcgccaccgctgaatttgacataattaatttc
agggactactactaccacggccgacgtatgactgtcgcctttaggaaccccttgttgcct
catgcgtcatttgagatgctacgtcatccgcgggttacgaaggttcaccatgataggacg
tgggaggatgctgtcactatgcaagacctggagcgcatggcaaaggagaaattttcggtg
ccggatgcggataagcttgatgggcatgcgagagatgttgcattgttggttgagaagtat
accagggagatgaatgggtctcataacgctgctgcgacggagcgtataacgggaaagacg
acgcagcggacgagttcttgtcttttgcagggtacgccgcagagtccgctcacagaggcc
gaatctcccgtgacgtctggccaaggaagtactattgagaaggtgactgccttggcccca
ccagaggcaactagctcaattgttagtggttctagcgttccgtctggtactgtgacaaac
aagagatggagcctcgtcgaacccatcagtccaccgagaatcaagcggagaaagagtcgt
tgcccactgcaggtttcggatgggaatcaacaagtgggtagcctagacttggactcgcat
gagaaaaatgatggtatatacaaagaagaaggagcagaaaaagagaataggctatag
DBGET
integrated database retrieval system
