Bosea sp. 685: RMR04_08950
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Entry
RMR04_08950 CDS
T10282
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bose Bosea sp. 685
Pathway
bose03030
DNA replication
bose03410
Base excision repair
bose03420
Nucleotide excision repair
bose03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bose00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RMR04_08950 (ligA)
03410 Base excision repair
RMR04_08950 (ligA)
03420 Nucleotide excision repair
RMR04_08950 (ligA)
03430 Mismatch repair
RMR04_08950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bose03032
]
RMR04_08950 (ligA)
03400 DNA repair and recombination proteins [BR:
bose03400
]
RMR04_08950 (ligA)
Enzymes [BR:
bose01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RMR04_08950 (ligA)
DNA replication proteins [BR:
bose03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RMR04_08950 (ligA)
DNA repair and recombination proteins [BR:
bose03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RMR04_08950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RMR04_08950 (ligA)
MMR (mismatch excision repair)
DNA ligase
RMR04_08950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RMR04_08950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
WNJ92403
UniProt:
A0AA96CCN5
LinkDB
All DBs
Position
1623773..1625923
Genome browser
AA seq
716 aa
AA seq
DB search
MSESQAIPVAELTQRQARAEHKLLAAEIAAADSAYFQDDQPILDDASYDAKRRRLVVLEE
AFPALKDAGSVSDKVGAKLSGKFAKIRHRVPMLSLGNAFTDEDVADFVQRVRSFLGMKEE
GGIAFTAEPKIDGLSLSLRYEEGRLVSAATRGDGEEGEDVTLNARTISEIPHVLSGDDVP
EIAEVRGEVYLGHADFAGINERQREKGLPEFANPRNAAAGSLRQLDVSITAARPLRFFAY
AWGEMPVLPAGTQFGVVEAFKRWGFRTNPLMKRCESVEELLERYRLIESQRATLGYDIDG
VVYKVDELVLQTRLGFVARAPRWAIAHKFPAELATTVLEAIEIQVGRTGALSPVAKLRPV
TVGGVVVSNATLHNEDYIRGFDSKGLPIRDGSDIRVGDTVTVKRAGDVIPRVQSVDLAKR
PADSQPYTFPTLCPACGSHATREMNPRSGKEDAVRRCTGGLICPAQAVERLKHFVSRDAL
DIDGLGDKQIEFFHADPDLPVKEPADIFTLAQRDAANFKKLKDKEGFGSQSVAKLFAAIE
DRRQPPLNRFIFGLGIRHIGETNARLLARHYGSFEALRAAGIAAADPVSPERQELDAIDG
VGPTVVEALMQFFAEAHNVELLDRLLAQVVPQPLEAVASVSPVAGKIVVFTGALEQMTRD
EAKAMAERLGAKVAGSVSSKTDLLVAGPGAGSKLKDAAKHGVQVIDEAGWFTLVGG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtcccaagccattcccgtcgcggagttgacgcagcgccaggccagggcggag
cacaagctgctcgccgccgagattgcggctgccgacagcgcctatttccaggacgaccag
ccgatcctcgacgatgcgagctatgacgccaagcgccgtcggctcgtcgtgctggaggag
gcgttcccggccctgaaggacgcggggtccgtcagcgacaaggtcggcgccaagctctcg
gggaaattcgccaagatccggcaccgcgtgccgatgctctcgctcggcaacgccttcacg
gatgaggatgtcgccgatttcgtgcagcgcgtgcgcagcttcctcggcatgaaggaggag
ggcggcatcgccttcacggcggagcccaagatcgacggtctctcgctctcgctgcgctac
gaggagggcaggcttgtctccgccgcgacgcgcggcgatggcgaggagggcgaggacgtc
acgctgaatgcccgcacgatttccgaaatcccgcatgtgctttctggcgatgatgtgccc
gagatcgccgaggtgcgcggcgaggtctatctcggccatgccgatttcgccggcatcaac
gaacgccagcgcgagaaggggctgcccgaattcgccaatccgcgcaatgcggcggcgggc
tcgttgcgccagctcgatgtttcgatcaccgcagcgcggcctttgcgcttcttcgcctat
gcctggggcgagatgccggtcttgccggctgggacgcagttcggcgtggtcgaggccttc
aagcgctggggttttcgcaccaatccgctgatgaagcgctgcgagagcgtcgaggagttg
ctggaacgctaccgattgatcgagagccagcgcgccacgctcggctacgatatcgacggc
gtcgtctacaaggtcgacgagcttgtcctgcagacgcggctcggcttcgtcgcgcgcgcg
ccgcgttgggcgatcgcgcataaattcccggccgagctcgcgaccacggtactggaggcg
atcgagatccaggtcgggcgcaccggcgcgctcagccccgtcgccaagctcaggccggtg
acagtcggcggcgtcgttgtctccaatgcgacgctgcacaatgaggattatatccgcggc
ttcgattccaaggggctgccgatccgcgacggctccgacattcgcgtcggcgatacggtg
acggtgaagcgcgcgggcgacgtcattccgcgcgtccagtcggtcgatctcgccaagcgg
ccagcggattcgcagccttataccttcccgacgctatgtccggcctgcggcagccatgcg
acccgggagatgaacccgcgcagcggcaaggaggatgcggtgcgccgctgcaccggcggc
ctcatctgcccggcccaagcggtggagcgcctgaagcacttcgtctcgcgcgacgcgctc
gacattgacgggctcggcgacaagcagatcgagttcttccatgccgatcccgacctgccg
gtgaaggagccggccgacatcttcacgctggcgcagcgcgacgccgcgaatttcaagaag
ctcaaggacaaggaaggttttggcagccagagcgtcgccaagctgttcgccgcgatcgag
gacaggcgccagccaccgctcaaccgcttcatcttcgggctcggcatccgccatatcggc
gagaccaatgcccggcttttggcgcggcattacggttcgttcgaggctttgcgcgcggct
ggcatcgcagctgccgatccggtctcgcccgagcgccaggaactcgacgcgatcgacggc
gtcgggccgaccgtggtcgaggcgttgatgcagttcttcgccgaggcgcataatgtggag
ttgctcgaccggcttttggctcaggtcgtgccgcagccactggaggcggtcgcctcggtc
agcccggttgcgggcaagatcgtcgtcttcaccggcgcgctggagcagatgacccgtgac
gaggccaaggcgatggccgagcggctcggcgccaaggtcgcgggctcggtctcctcgaag
accgatcttctggtcgcggggcctggcgccggctcgaagctcaaggacgccgcaaagcac
ggcgtccaggtcatcgacgaggcaggttggttcaccctcgtcggaggctag
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