Boseongicola sp. MH-Pat-all_autometa_1-3: GKR98_04795
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Entry
GKR98_04795 CDS
T10172
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bosg Boseongicola sp. MH-Pat-all_autometa_1-3
Pathway
bosg03030
DNA replication
bosg03410
Base excision repair
bosg03420
Nucleotide excision repair
bosg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bosg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GKR98_04795 (ligA)
03410 Base excision repair
GKR98_04795 (ligA)
03420 Nucleotide excision repair
GKR98_04795 (ligA)
03430 Mismatch repair
GKR98_04795 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bosg03032
]
GKR98_04795 (ligA)
03400 DNA repair and recombination proteins [BR:
bosg03400
]
GKR98_04795 (ligA)
Enzymes [BR:
bosg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GKR98_04795 (ligA)
DNA replication proteins [BR:
bosg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GKR98_04795 (ligA)
DNA repair and recombination proteins [BR:
bosg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GKR98_04795 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GKR98_04795 (ligA)
MMR (mismatch excision repair)
DNA ligase
GKR98_04795 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GKR98_04795 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QMU57579
LinkDB
All DBs
Position
950581..952701
Genome browser
AA seq
706 aa
AA seq
DB search
MPDDIPVGELSVDQAVSELARLSKKIENANAKYFQDDDPEITDAEFDRLKKRNSEIELRF
PDLKSKNSPSDVVGSAPTSGFQKIAHSVPMLSLSNAFSKEDVEDFNVSIRKFLGLSGVDT
LTFTAEPKIDGLSLSLRYESGKLQHAATRGVGSIGENVTANARSIEDVPKSISGAPDLLE
VRGEVYMSHDDFGRLNQRQKELHEKVFANPRNAAAGSLRQLDPSVTASRPLKFFAYAWGS
ISAPLGKTQKEALDFLSQLGFSTNPLTKICQSTDDLIQHYSLIEEQRASLNYDIDGVVYK
VNDLELQSRLGFRSTTPRWATAHKFPAELAWTRLLEIDIQVGRTGALSPVARLQPVTVGG
VVVSNATLHNEDYIEGKNSKGEPIRGGNDIRIGDWVQVYRAGDVIPKVKDIDLSKRPADS
QKYEFPRICPECQSEAFREPGDAVRRCSGGLICPAQAVEKLRHFVSRSAFDIDGLGAKQV
EQFYGDGWIKEPADIFQLEAKFGTGENRLSNKEGWGEKSANKLFAAIREKSNVPLKKLIF
ALGIRHVGESAGALLANHFGSWSNLISSVDKTEIGEGEDWEALLSVDGVGQIMAASFVTA
LQQPSERAFIDRLLEHLDVQDAEQTIGSDSPVSGKVIVFTGTLEKMSRAEAKSRAEVLGA
KVSSSVSSRTDLVVAGPGAGSKAKKAVELGIETIDEEGWLRLIEGL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccagatgatatcccagtcggtgaactttcggttgatcaggcggtttctgaactggcc
cgcttgtcgaagaaaattgagaacgccaacgccaaatattttcaagacgacgatcccgaa
attacagatgccgaatttgacaggctaaaaaagcggaattccgagattgaacttcggttt
cctgatctgaaatccaaaaactctccaagcgatgttgttggctctgcacctacttcggga
tttcagaaaatcgcccattctgtcccaatgctatcgctaagcaacgcgttttcaaaagaa
gatgtagaagattttaacgtatcaattcggaaattcctgggcctgagtggcgtagacacg
ctgacatttactgccgaaccgaagatcgatggtttgtcgctttcccttcgatacgagagc
ggcaaacttcagcacgcggccacgcgcggcgttggatcgatcggcgagaatgtcactgcc
aatgcccgatcaatcgaagacgttcccaaatccattagcggcgcccccgacttacttgaa
gttcgaggcgaagtttacatgagtcacgatgacttcggcagactcaatcagcggcaaaag
gaactgcatgagaaggttttcgcaaatccgcgaaatgccgcggccggttctttgcgacaa
ctggatccgagcgtcacagcatcgcggccattgaagttctttgcctatgcttggggcagt
ataagtgcaccactcggcaagacccagaaagaagcactcgattttttgagccagttgggg
ttttctaccaacccgctcacaaaaatttgtcaatccactgatgacctcattcaacactat
tctctaattgaagagcaacgagcatcgctgaattatgacattgatggcgtagtgtacaag
gtcaatgatcttgaattgcagtcgagactggggttccgatcgacgacgccaagatgggca
acggcgcataagtttccggcggaattggcttggacacgactgttggaaatcgacattcag
gttgggcgcacaggcgccctaagtcctgtcgctcggctgcaaccagtaacagttggtggc
gttgtggtctcgaatgcaacgctacacaacgaagactatatcgaaggaaaaaactcaaaa
ggcgagccaattagaggtggcaacgatattagaattggcgattgggttcaggtctatcgt
gctggcgatgtcattcccaaggtgaaggatatcgacctctcgaaacggccagccgactcg
cagaagtatgagtttccacgcatctgcccggaatgccaatccgaagcatttcgcgagccc
ggtgacgcagtcaggcgttgctcgggtggattgatatgcccggcacaagccgttgagaaa
ctacggcattttgtttcacgctcagcctttgacattgatgggcttggtgccaaacaggtc
gagcagttttatggcgatggttggattaaagagccggctgacatttttcaattggaagca
aagttcggaacaggtgaaaatagacttagcaacaaagaaggatggggcgaaaagtcagcc
aacaagctttttgctgctatccgtgaaaaatcaaatgtcccgctgaaaaagctgatcttt
gcgcttggaattcgacatgtcggggaaagcgcgggtgcacttctggccaatcatttcggg
tcttggtcaaacttgatatcttcagtcgacaaaacagaaattggtgaaggcgaagactgg
gaagcgctgttgtcggtcgatggcgttgggcaaattatggcggcgtcatttgtcacggcg
ttgcagcaaccatccgaacgtgcttttatcgatcgccttttggaacatctggatgttcaa
gacgccgaacaaaccatcggctctgatagcccggtttcgggaaaagtaattgttttcacg
ggcactttggaaaaaatgtctcgggctgaagcaaaatctcgtgccgaagttttgggggca
aaagtttcaagctctgtgtcatctcgcactgaccttgtggtcgccggccccggcgccgga
tcgaaggcgaaaaaggccgtcgaactgggcattgagactatcgatgaagaaggatggctc
agattgattgaagggttatga
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