Bradyrhizobium ottawaense: CIT37_21660
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Entry
CIT37_21660 CDS
T05524
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bot
Bradyrhizobium ottawaense
Pathway
bot03030
DNA replication
bot03410
Base excision repair
bot03420
Nucleotide excision repair
bot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CIT37_21660 (ligA)
03410 Base excision repair
CIT37_21660 (ligA)
03420 Nucleotide excision repair
CIT37_21660 (ligA)
03430 Mismatch repair
CIT37_21660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bot03032
]
CIT37_21660 (ligA)
03400 DNA repair and recombination proteins [BR:
bot03400
]
CIT37_21660 (ligA)
Enzymes [BR:
bot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CIT37_21660 (ligA)
DNA replication proteins [BR:
bot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CIT37_21660 (ligA)
DNA repair and recombination proteins [BR:
bot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CIT37_21660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CIT37_21660 (ligA)
MMR (mismatch excision repair)
DNA ligase
CIT37_21660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CIT37_21660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AWL94476
UniProt:
A0A2U8P9Q7
LinkDB
All DBs
Position
2371133..2373223
Genome browser
AA seq
696 aa
AA seq
DB search
MMLRAYAEEIERAKHAYYNLDKPIIPDADYDVLEKLLISTWKQQKRWKEYFDRIRIVGAK
PSGRFAKVQHVVPMLSLGNAFSDEDVTEFVERIRRFLKLGDDHIPALVAEPKIDGLSLSL
RYENGELIRAATRGDGFTGEDVTANVRTIKDVPHTLKGRHIPAACEMRGEVYMLKKDFLE
LNKKQAAADDAVFANPRNSAAGSLRQKDVSVTASRPLKFFAYTWGEMSERPAETQHGMLE
WMHKAGFVVNPRTRLCKSLDEVLEFYNEIGEDRASLGYDIDGVVYKIDRLDWQDRLGFVS
RSPRWAIAHKFAAEQATTLLKGIDIQVGRTGAMTPVARLEPVTVGGVVVSNATLHNEDYI
KGIGNDGAPIRDGVDLRVDDTVVVQRAGDVIPQVVGVVMDKRPKSAKPYKFPETCPVCGS
HAVREEGGAVRRCTGALICPAQAVERLKHFVSRLAFDIDGLGEKQIQEFYEDGIVMSPVD
IFTLRERDKRSVKKLMEREGYGETSVRNLFDAIDARRNVELHRLIFALGIRHVGEGNAKL
LARHYGTIESFRDAMLAAANGLGEEENTTEAYQDLNNIGGVGEIVADAVVEFFAEPRNVK
ALGELLGEIKVKPAEQPRKSSPVSDKTVVFTGSLTKFTRDEAKAMAERLGAKVAGSVSKK
TNYVVAGEEAGSKLAKARELGVAVLTEDEWLKLIGE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgcgggcttacgctgaggagatcgagagggcgaagcacgcctactataacttg
gacaagccgatcataccggacgcagattacgatgtcctagagaagctgcttatcagtaca
tggaagcaacagaagcgatggaaggaatattttgatcgaataaggatcgttggagccaag
ccctcgggacgctttgcgaaggtgcagcatgtcgtgcccatgctctcgcttggcaatgcc
ttcagcgacgaggatgtgactgaattcgtcgagcgcatccggcgtttcctcaagctcggt
gacgatcacattccggcactggttgccgagcccaagattgacggtctgtcactgtcgcta
cgttacgaaaatggcgaactgattcgcgccgcgacccgcggcgatggatttaccggagag
gacgtcaccgccaatgtccgtaccatcaaggacgttccgcacacgctgaagggccggcac
attcccgcggcctgtgaaatgcgcggcgaggtctacatgctcaagaaggattttctcgag
ctgaataagaaacaggccgccgcggacgatgcggtctttgccaatccgcgaaattcagcg
gcaggttctttgcgccagaaggatgtttcggtcacagcctcccgcccgctgaagttcttc
gcctacacctggggcgagatgagcgagcgtccggccgagacgcagcatggcatgctggag
tggatgcacaaggcaggtttcgttgttaatccgcgaacgcggttatgcaagagcctcgac
gaggtcctggagttttacaatgagattggcgaggaccgagcctcgctcggctacgatatc
gacggcgtggtctacaagatcgaccgactggactggcaggaccggcttggtttcgtctcg
cgcagtccgcgctgggcgatcgcccataaattcgcggcggagcaagcaaccacgctcctc
aaaggcatcgatatccaagtgggccgaaccggtgcgatgacgccggtcgcacgactcgaa
ccggtgacggtcggcggcgtcgtggtttcgaatgcgactctgcacaatgaggactacatc
aagggtatcggcaatgacggtgcccccattcgtgacggcgtcgatcttcgagtcgatgat
accgtcgtcgtccagcgcgccggcgacgtcattcctcaggtcgtcggcgttgtcatggac
aagcggccgaagagcgccaagccctacaagtttcccgagacctgtccggtctgtggcagt
catgctgtccgcgaagagggcggggcggtgcgacggtgcaccggagcgctgatctgtccg
gcgcaggcggtggaacgcctcaaacatttcgtctcgcgcctcgcgttcgatattgacggg
ctcggcgagaagcagatccaggagttttacgaggacggcatcgtaatgtcgccggtcgac
atcttcaccctccgggagcgcgacaagcggtcggtgaagaagttgatggagcgggaaggt
tacggcgagacatcggtacgtaacctattcgacgcgatcgacgccagacgcaatgtcgag
ctgcatcggctgatctttgcattgggaattcgccatgtcggcgagggcaatgccaagctg
ctggcccggcactacggcacgatcgagagttttcgcgacgcgatgcttgctgccgcgaac
ggcctcggcgaggaagaaaacaccacggaggcctatcaggacctcaacaacatcggcggg
gtcggcgagatcgtggccgacgcggtggtcgagttcttcgccgagccgcgcaacgtcaag
gcgctcggcgaattgctaggtgagatcaaggtgaagccggctgagcagccgcgcaagagc
tcgccagtttctgacaagacggtcgtattcacgggctcgctgaccaagttcacccgcgat
gaagccaaggcaatggctgagcgcctcggcgccaaggtcgccggatcggtttccaagaag
accaactatgtggttgcaggcgaggaggctggttccaagcttgccaaagcacgcgagctc
ggcgtcgccgtgctgaccgaagatgagtggctgaagttgatcggggagtga
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integrated database retrieval system
