Heyndrickxia oleronia: I5818_23720
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Entry
I5818_23720 CDS
T07202
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bou
Heyndrickxia oleronia
Pathway
bou03030
DNA replication
bou03410
Base excision repair
bou03420
Nucleotide excision repair
bou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I5818_23720 (ligA)
03410 Base excision repair
I5818_23720 (ligA)
03420 Nucleotide excision repair
I5818_23720 (ligA)
03430 Mismatch repair
I5818_23720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bou03032
]
I5818_23720 (ligA)
03400 DNA repair and recombination proteins [BR:
bou03400
]
I5818_23720 (ligA)
Enzymes [BR:
bou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I5818_23720 (ligA)
DNA replication proteins [BR:
bou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I5818_23720 (ligA)
DNA repair and recombination proteins [BR:
bou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I5818_23720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I5818_23720 (ligA)
MMR (mismatch excision repair)
DNA ligase
I5818_23720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I5818_23720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
HHH_3
5_3_exonuc
HHH_8
Mur_ligase_C
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
QQZ04616
LinkDB
All DBs
Position
complement(4725395..4727401)
Genome browser
AA seq
668 aa
AA seq
DB search
MEKKAAEKRVQELHTLLNQYNYEYHVLDHPSVPDAEYDQLMRELTDIEAQYPDLVSPESP
TQRVGGEILSAFNKVEHKIPMLSLGNAFNEADLRDFDRKVKQAVGDDVEYVCELKIDGLA
ISLHYENGLFIQGSTRGDGTIGEDITANLKTIRSIPLRISQPMTIEVRGEAYMPKKSFEK
LNQQKEENGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYAIGDFSETGATTHHDGLN
LLEKLGFKVNKEREKCTSIEEVIQYVQKWVEKRPHLPYEIDGIVIKVNSFVQQSELGTTA
KSPRWAIAYKFPAEEVVTRLRDIELSVGRTGVITPTALLDPVRVAGTKVQRASLHNEDLI
REKDIKIGDHVVIKKAGDIIPEVVNVLVERRTGEEKEFLMPTHCPECESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFSHELIHDVADIYRLQKDQLLAL
ERMGEKSVTNLLAAIEKSKSNSLEKLLFGLGIRHVGAKAAKTLAQQFGNMNELKKATREE
LTAIQDIGEKMADSIVSYFENEEAISLIQELEAAGLNMNYTGPMPVQVESISSSLAGKVV
VLTGKLEQLTRNEAKEQLEALGATVTGSVSKKTDLVIAGADAGSKLTKATELGIEVWDEE
KMLEEFNR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaaggctgctgaaaagcgtgtacaggagctgcatacactcctaaatcaatac
aattatgagtatcatgtgttagatcatccctccgttccagatgcagaatatgaccagtta
atgagagagttaacagatattgaagcacagtatcccgacttagtttcaccggaatcccct
acgcaacgtgtaggtggggaaattttatcagcctttaataaagttgagcataagattcca
atgttaagtctcggaaatgcttttaatgaagcagacttacgtgattttgatcgcaaagta
aagcaagcagttggcgacgatgttgaatatgtatgtgaactgaaaatagatggattggca
atctctctacattatgaaaacgggctatttatccaaggatctactagaggagacggaacg
attggtgaggatattacggctaatcttaagacaatccgttccattccattgcggataagt
caaccaatgacaattgaggttcgtggcgaagcatatatgccgaaaaagtcctttgaaaaa
ttaaatcaacaaaaggaagagaatggagaagaaccattcgctaatcctcgaaatgctgct
gctggctctttacgacagcttgatcctagaatcgcagcatctagaaatttggatatattc
ctgtatgctatcggcgattttagtgaaacaggtgctacgacccatcatgacggattaaat
ttattagaaaagcttggttttaaagtaaacaaggaacgagagaaatgtacaagtattgaa
gaggtcattcaatatgtgcagaaatgggttgaaaaaagacctcatctcccgtatgagatt
gatggaattgttataaaggtaaattcatttgttcagcaaagtgaacttgggacgacagca
aaaagtccaagatgggcaatagcttataagtttcctgcagaggaagtcgttacaaggcta
cgtgatatcgaattgagtgttggtcgaacaggtgtgattacaccgacagcattattggac
cctgttcgagtggcgggaacgaaagtacaaagagcatcattgcataatgaagatttaatt
cgtgagaaggatattaaaattggcgaccatgttgtcattaaaaaagcaggagatattatt
cctgaagtagtgaatgtattagtggaaagacgtacaggtgaggaaaaggaatttttgatg
cctacacattgtcctgaatgtgaaagtgaacttgttcgtctagaaggtgaagttgcttta
cgctgcatcaatccaaaatgtccagctcaaataagagaagggttaatccactttgtttct
agaaatgcaatgaatatagatggtttaggtgaaaaggttattagtcaattattctcacac
gagctcattcacgatgttgcagatatctatcgtttacagaaagatcagctattagcttta
gaacgtatgggagagaagtctgtaacaaatttattagcggctattgaaaagtcaaaatcc
aattcattagaaaaactattatttggtcttgggattcgccatgtaggggcaaaagcggct
aaaacattagcgcaacaatttggaaacatgaatgagctaaagaaggcaacaagagaagag
cttacagctattcaagatattggcgaaaagatggcagactcaattgtttcttattttgaa
aatgaagaggcaatttcattgatccaagagctagaagctgcagggttaaacatgaattat
acaggtccaatgccggttcaagtggaatccatttcatcttctttagcagggaaagttgta
gttttaacgggaaaacttgagcagctgacaagaaatgaagcaaaggagcaactcgaggca
ttaggggctacagttacaggtagtgtaagtaaaaaaacagatttagtcattgctggagca
gatgcaggatcgaaattaacaaaggcaacagagcttggcattgaagtttgggatgaagag
aaaatgctggaagagtttaatcgttaa
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integrated database retrieval system
